Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0218
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0227 - 28523385-28524278                                         29   3.8  
05_07_0336 - 29364751-29365584                                         28   6.7  
05_05_0064 + 22063951-22064462,22066344-22066566                       28   6.7  
12_01_0939 + 9301026-9301040,9301115-9301312                           27   8.9  

>05_07_0227 - 28523385-28524278
          Length = 297

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 451 YPAVQHPARRRGTRASPDRLIKTLTLQVTG 362
           +P  QHP +RR  R +  RL   L   VTG
Sbjct: 81  HPQQQHPPQRRKVRTAVSRLRSALAAAVTG 110


>05_07_0336 - 29364751-29365584
          Length = 277

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -2

Query: 542 FLVISLSIGFWQRINQISIDRYCRRDSCNALSCSTASSQETWNTSFSRPVN*NLNF 375
           F  +S++   W   +  ++D    + +    S + A+++  +N S  RP N N NF
Sbjct: 21  FSSLSIADSIWSSPSPAAVDHSSNKLALANNSNNNATAKTYFNKSVGRPANNNFNF 76


>05_05_0064 + 22063951-22064462,22066344-22066566
          Length = 244

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
 Frame = -2

Query: 512 WQRINQISIDRYCRRDSCNALSCSTASSQETWNTSFSR------PVN*NLNFTGHRF 360
           W +I    I   C   +CN +    + S E WN S S       P      + GHRF
Sbjct: 164 WFKIRGNKICEICSSTACNVVGIGDSESVEQWNESNSTAPAQAPPAETQRFWQGHRF 220


>12_01_0939 + 9301026-9301040,9301115-9301312
          Length = 70

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 407 SSCSTSPGWMLYCRI 451
           S C TSP W L+CR+
Sbjct: 25  SECVTSPPWTLFCRL 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,012,976
Number of Sequences: 37544
Number of extensions: 271629
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)