Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0218
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-3142|ABC67194.1|  405|Drosophila melanogaster CG34019-P...    31   1.6  
U83412-1|AAB41049.1|  225|Drosophila melanogaster CAG protein.         29   6.5  
AY052013-1|AAK93437.1|  926|Drosophila melanogaster LD47309p pro...    29   6.5  
AE013599-3135|AAM70854.1|  926|Drosophila melanogaster CG4050-PB...    29   6.5  
AE013599-3134|AAF46676.2|  926|Drosophila melanogaster CG4050-PA...    29   6.5  

>AE014298-3142|ABC67194.1|  405|Drosophila melanogaster CG34019-PA
           protein.
          Length = 405

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 524 SIGFWQRINQISIDRYCRRDSCNALSCSTASSQETWNTSFSR 399
           +I +WQR N  + D YCRRD    ++ + +++    ++S +R
Sbjct: 117 AINYWQREN--AFDVYCRRDESRRVNVNRSTAMPEMSSSMAR 156


>U83412-1|AAB41049.1|  225|Drosophila melanogaster CAG protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 398 VGRSSCSTSPGWMLYCRIVH---YNCRGDSIYL*RFD 499
           +G S+ STS GW+   R  H   YN  GDS+ L  F+
Sbjct: 116 LGHSNFSTSSGWLEKWRKTHNVRYNDTGDSLDLQEFE 152


>AY052013-1|AAK93437.1|  926|Drosophila melanogaster LD47309p
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 572 AVGVFAWKLCFLVISLSIGF-WQRINQISIDRYCRRDSCNALSCSTASSQETWNT 411
           A+  F + L  L++ LS+   W+R+ ++ + R C     NA+S  ++SS    NT
Sbjct: 114 ALEPFGYHLVNLLLHLSVCLLWRRVCRLLL-RQCAASGSNAISAPSSSSVSQLNT 167


>AE013599-3135|AAM70854.1|  926|Drosophila melanogaster CG4050-PB,
           isoform B protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 572 AVGVFAWKLCFLVISLSIGF-WQRINQISIDRYCRRDSCNALSCSTASSQETWNT 411
           A+  F + L  L++ LS+   W+R+ ++ + R C     NA+S  ++SS    NT
Sbjct: 114 ALEPFGYHLVNLLLHLSVCLLWRRVCRLLL-RQCAASGSNAISAPSSSSVSQLNT 167


>AE013599-3134|AAF46676.2|  926|Drosophila melanogaster CG4050-PA,
           isoform A protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 572 AVGVFAWKLCFLVISLSIGF-WQRINQISIDRYCRRDSCNALSCSTASSQETWNT 411
           A+  F + L  L++ LS+   W+R+ ++ + R C     NA+S  ++SS    NT
Sbjct: 114 ALEPFGYHLVNLLLHLSVCLLWRRVCRLLL-RQCAASGSNAISAPSSSSVSQLNT 167


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,800,858
Number of Sequences: 53049
Number of extensions: 476958
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)