Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0218
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 530 SLSIGFWQRINQISIDRYCRRDSCNALSCSTASSQETWNTSFSRP 396
           SL+  F+   NQ ++D+Y    +    S   A     W+++ + P
Sbjct: 370 SLNEDFYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGIWHSNLTTP 414


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 194 RQLLIIIRNSKIQADTDYVK*WCSWNDNLFTKMQEI 87
           + L +I RNS     TD +  WC+W++    K + +
Sbjct: 370 KYLDVIERNS---GATDKIIRWCTWSEGDLEKCKAL 402


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 194 RQLLIIIRNSKIQADTDYVK*WCSWNDNLFTKMQEI 87
           + L +I RNS     TD +  WC+W++    K + +
Sbjct: 370 KYLDVIERNS---GATDKIIRWCTWSEGDLEKCKAL 402


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 194 RQLLIIIRNSKIQADTDYVK*WCSWNDNLFTKMQEI 87
           + L +I RNS     TD +  WC+W++    K + +
Sbjct: 370 KYLDVIERNS---GATDKIIRWCTWSEGDLEKCKAL 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,778
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)