Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0217
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    87   3e-18
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
 Frame = +2

Query: 251 QYPLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXX 415
           Q P +T+K+IG Q +  YE +DF       + FDSY++P  +++    R L+VD      
Sbjct: 107 QKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLP 166

Query: 416 XXXXXXXXXTATDVIHS*TIPSLGIKVDANPVD*IKQTSLLIDL-GIFFGQCSEICG 583
                    T+ DVIHS  +PSLGIK D  P   + Q SL ID  G+F+GQCSE+CG
Sbjct: 167 IDTRIRLILTSGDVIHSWAVPSLGIKCDCIP-SRLNQVSLSIDREGLFYGQCSELCG 222



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 138 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLLY 236
           ++   G I+E I T+IPA  LI +ALPS +LLY
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLY 101


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 644 LNKVLDGNTFQLHRYKTMISSHKFLNIDQKKF 549
           LNK++  N+  L  ++ ++S   F +ID+KKF
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKF 315


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 423 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 310
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,341
Number of Sequences: 5004
Number of extensions: 37312
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)