Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0217
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       104   8e-23
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       104   8e-23
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        82   4e-16

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  104 bits (249), Expect = 8e-23
 Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
 Frame = +2

Query: 257 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 430
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 431 XXXXTATDVIHS*TIPSLGIKVDANPVD*IKQTSLLIDL-GIFFGQCSEICGS*S*FYTY 607
               TA DVIHS  +P+L +K+DA P   + QT   I   G+F+GQCSEICG+   F   
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVP-GRLNQTGFFIKRPGVFYGQCSEICGANHSFMPI 219

Query: 608 VI 613
           VI
Sbjct: 220 VI 221



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/78 (34%), Positives = 39/78 (50%)
 Frame = +3

Query: 3   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 182
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 183 IPAFTLIFIALPSLRLLY 236
           IPA  LIFIA PSL+LLY
Sbjct: 76  IPAIILIFIAFPSLKLLY 93



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 555 FLVNVQKFVGANHSFIPM*LESISIQNFI 641
           F     +  GANHSF+P+ +E++S+  +I
Sbjct: 202 FYGQCSEICGANHSFMPIVIEAVSLDKYI 230


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  104 bits (249), Expect = 8e-23
 Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
 Frame = +2

Query: 257 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 430
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 431 XXXXTATDVIHS*TIPSLGIKVDANPVD*IKQTSLLIDL-GIFFGQCSEICGS*S*FYTY 607
               TA DVIHS  +P+L +K+DA P   + QT   I   G+F+GQCSEICG+   F   
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVP-GRLNQTGFFIKRPGVFYGQCSEICGANHSFMPI 219

Query: 608 VI 613
           VI
Sbjct: 220 VI 221



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/78 (34%), Positives = 39/78 (50%)
 Frame = +3

Query: 3   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 182
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 183 IPAFTLIFIALPSLRLLY 236
           IPA  LIFIA PSL+LLY
Sbjct: 76  IPAIILIFIAFPSLKLLY 93



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 555 FLVNVQKFVGANHSFIPM*LESISIQNFI 641
           F     +  GANHSF+P+ +E++S+  +I
Sbjct: 202 FYGQCSEICGANHSFMPIVIEAVSLDKYI 230


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +2

Query: 257 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 430
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 431 XXXXTATDVIHS*TIPSLGIKVDANP 508
               TA DVIHS  +P+L +K+DA P
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVP 186



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/78 (34%), Positives = 39/78 (50%)
 Frame = +3

Query: 3   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 182
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 183 IPAFTLIFIALPSLRLLY 236
           IPA  LIFIA PSL+LLY
Sbjct: 76  IPAIILIFIAFPSLKLLY 93



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 511 RLNQTNFFINRPGNFFWSMFRNLWELIIV 597
           RLNQT FFI +  +F  SMFR+L   II+
Sbjct: 188 RLNQTGFFIKKTWSFLRSMFRDLRGPIIL 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,451
Number of Sequences: 59808
Number of extensions: 217032
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)