Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0217
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 556 FWSMFRNLWELIIVLYLCNWKVFPSKTLF 642
           +W+ F   WE++++  LC++ + P+K  F
Sbjct: 276 WWASFMCTWEMMLLSALCSYCLRPAKCKF 304


>AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical
           protein T28F2.1 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -3

Query: 635 VLDGNTFQLHRYKTMI--SSHKFLNIDQKKFPGRLIKKFV 522
           V+DG+ FQ H+Y + I  S  K+LN  Q++   +L+KK +
Sbjct: 159 VIDGHYFQSHKYFSSIETSIRKWLNPPQEE--EKLLKKMI 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,543
Number of Sequences: 27780
Number of extensions: 189093
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)