Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0217
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.29 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -3

Query: 635 VLDGNTFQLHRYKTMISSHK----FLNIDQKKFPGRLIKK 528
           V  G    L  YKT+ISSH      +N D  KF   L+ K
Sbjct: 40  VSSGFRSSLRNYKTLISSHDELPGHINCDSSKFEEDLMNK 79


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 547 GNFFWSMFRNLWELIIVLYLCNWK 618
           GN  W +   L  + I+ Y C WK
Sbjct: 170 GNIRWELAGTLLLVWILCYFCIWK 193


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 558 LVNVQKFVGANHSFI 602
           L+NV K++G  H FI
Sbjct: 103 LINVVKYLGGKHKFI 117


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 535 INRPGNFFWSMFRNLWELIIVLYLCNWK 618
           I   G+  W +   L  + I+ Y C WK
Sbjct: 199 IENIGSIRWELAGTLAVVWIMCYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 535 INRPGNFFWSMFRNLWELIIVLYLCNWK 618
           I   G+  W +   L  + I+ Y C WK
Sbjct: 252 IENIGSIRWELAGTLAVVWIMCYFCIWK 279


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 537 NKEVCLI*STGLASTLIPNEGIVH 466
           N+ +C++ S   A     N GIVH
Sbjct: 155 NERICILKSITCALQFCHNAGIVH 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,198
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)