Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0217
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50240.1 68418.m06222 protein-L-isoaspartate O-methyltransfer...    30   1.7  
At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, putati...    28   5.0  

>At5g50240.1 68418.m06222 protein-L-isoaspartate
           O-methyltransferase, putative / PIMT, putative similar
           to SP|Q42539 Protein-L-isoaspartate O-methyltransferase
           (EC 2.1.1.77) (Protein- beta-aspartate
           methyltransferase) (PIMT) (Protein L-isoaspartyl
           methyltransferase) (L-isoaspartyl protein carboxyl
           methyltransferase) {Arabidopsis thaliana}; contains Pfam
           profile PF01135: Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase (PCMT)
          Length = 269

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 614 QLHRYKTMISSHKFLNIDQKKFPGRL 537
           +LHRY +  SS +FLN++  +F G L
Sbjct: 51  RLHRYNSSSSSSQFLNLNLSRFSGAL 76


>At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, putative
           similar to cytochrome c oxidase subunit II [Brassica
           rapa] GI:2707741; contains Pfam profile PF02790:
           Cytochrome C oxidase subunit II, transmembrane domain
          Length = 291

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 LLEGQIIELI*TIIPAFTLIFIALPSLRL 230
           ++ G  IE++ TI P F  IFI  PS  L
Sbjct: 75  IVHGTTIEILRTIFPCFISIFIVEPSFAL 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,175,699
Number of Sequences: 28952
Number of extensions: 165042
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)