Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0216
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1WTE7 Cluster: Oligosaccharide translocase; n=1; Lacto...    33   7.9  
UniRef50_A0MND0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q1WTE7 Cluster: Oligosaccharide translocase; n=1;
           Lactobacillus salivarius subsp. salivarius UCC118|Rep:
           Oligosaccharide translocase - Lactobacillus salivarius
           subsp. salivarius (strain UCC118)
          Length = 510

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 368 KSYILVINIVFIVAFFKDINLIFYSFIMLSVTFKHFV 478
           KSY+L   I+F++A    + LI  +FIM +  F HFV
Sbjct: 338 KSYLLSSGIIFMIALNLFMRLIRNTFIMFNNAFGHFV 374


>UniRef50_A0MND0 Cluster: Putative uncharacterized protein; n=1;
           Thermus phage phiYS40|Rep: Putative uncharacterized
           protein - Thermus phage phiYS40
          Length = 181

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 247 NDIREHYDRLPFYVLVIFKNVRMILF*NEVNKKE--ACLYIKKKLHISNKYCIYSCFFQR 420
           ND  ++ D L   +   FK     L  N V + E  A +Y K+K+   N Y +YS +F  
Sbjct: 105 NDDEKYSDYLLRNINEFFKQALPELLENNVKRPEIHAAIYRKRKVDTYNGYKVYSDYFYE 164

Query: 421 Y*F-DILL 441
           Y F +I+L
Sbjct: 165 YIFLEIIL 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,743,053
Number of Sequences: 1657284
Number of extensions: 8252940
Number of successful extensions: 15159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15154
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)