Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0216
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    28   5.0  
Z81147-9|CAB03538.1|  349|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 423 ISLKKATINTIFITNM*LFLYV*TCLLFIYFVLKQYHTYVFKYN*NIKWQSIVMFTNIIK 244
           +S   AT+   F  N  + LY    L+ I F +KQY  Y F    +I++  +V++  + +
Sbjct: 257 VSYPLATLYLHFAFNCCVLLYSFLMLIIIIFSVKQYRMYYF----SIRFVRVVLYPLVGR 312

Query: 243 IF 238
            F
Sbjct: 313 CF 314


>Z81147-9|CAB03538.1|  349|Caenorhabditis elegans Hypothetical
           protein T09E11.11 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +1

Query: 244 LNDIREHYDRLPFYVLVIFKNVRMILF*NEVNKKEACLYIKKKLHISNKYCIY--SCFF- 414
           L D+++ YD LPF V+    +V  + F + +N +    Y+ +  +  +KY +Y    F+ 
Sbjct: 212 LADLQDTYDNLPFKVVPSMHHV--LAFSDTMNSR----YVPETAYNCSKYPVYVMGPFYL 265

Query: 415 -QRY*FDILLIHYAFRNF*TFCTSSVT 492
             R    ++L H  F+NF T   + +T
Sbjct: 266 TTRDAAKLILAHSRFQNFITVEDALIT 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,857
Number of Sequences: 27780
Number of extensions: 218217
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)