Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0215
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55EN4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q58674 Cluster: Uncharacterized protein MJ1278; n=1; Me...    33   5.8  
UniRef50_Q8IHP9 Cluster: Putative uncharacterized protein; n=3; ...    33   7.6  

>UniRef50_Q55EN4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 959

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = -3

Query: 624 ILKPVNLVNYKGLNKYFIPKKYQSTLNQNNATNTSRHSWTFHLEKLLSILYWLLVSYKMS 445
           I+KP++ + Y+ L    +  KY    N NN  N + ++W   L   +  +  L+ + ++ 
Sbjct: 526 IIKPIDTIYYESLYSLLLNGKYSLNNNNNNNNNNNNNNWDDKLLNYIGKINTLIDNQEIK 585

Query: 444 FN*ECAWICAI 412
            +  C  +  I
Sbjct: 586 IHKNCKSVAEI 596


>UniRef50_Q58674 Cluster: Uncharacterized protein MJ1278; n=1;
           Methanocaldococcus jannaschii|Rep: Uncharacterized
           protein MJ1278 - Methanococcus jannaschii
          Length = 179

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 108 VCLMNHTDLYNLLEMLSTGRGKLNMNIDYIKKTTTYLKN 224
           V +M  TD  N+ ++   G+ K+N +++YI  TTTY+++
Sbjct: 103 VLVMYQTDFKNMFKIPIFGKVKINHDLNYIIATTTYIED 141


>UniRef50_Q8IHP9 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2940

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 179  HEYRLYKKNYHLFKKQRCNTAGPYN 253
            H   ++ +N HLFKK++C+ A PY+
Sbjct: 2634 HLQNMHNENNHLFKKEKCDQAKPYS 2658


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,404,057
Number of Sequences: 1657284
Number of extensions: 8345752
Number of successful extensions: 19594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19590
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)