Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0215
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    31   0.18 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    28   0.98 
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   1.7  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.3  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   5.2  

>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 195 YNLYSCLIYLDQYSTFQANYIDLYDSLSKHINSLHNKA 82
           Y L +    L+ Y+TF   Y+DL D+   +++ L NKA
Sbjct: 278 YKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKA 315


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = -3

Query: 534 ATNTSRHSWTFHLEKLLSILY----WLLVSYKM 448
           AT+TSR S  FH E++  IL+    WL + Y++
Sbjct: 828 ATDTSRFSSAFHTEEVYEILHSRIDWLNIKYEV 860


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 498 LEKLLSILYWLLVSYKMS 445
           LE ++SILYW +VSY  S
Sbjct: 29  LETIVSILYWSIVSYDRS 46


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 174 LNMNIDYIKKTTTYLKNNAATL 239
           LN   +Y+++ TTY KNN  TL
Sbjct: 522 LNELFEYLQEKTTYYKNNLTTL 543


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -3

Query: 171 YLDQYSTFQAN---YID-LYDSLSKHINSLHNKA 82
           ++D+Y T+ A    Y+D  YD L +H  + HNKA
Sbjct: 664 WVDEYMTWVAEIGGYLDDSYDELEQHHANFHNKA 697


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 588 LNKYFIPKKYQSTLNQNNATNTSRHSWTFHLE 493
           LN+  +PK   S + Q+NA NT+ +  T  ++
Sbjct: 36  LNRASLPKTQNSAIPQSNALNTTPNESTSQID 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,161
Number of Sequences: 5004
Number of extensions: 39544
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)