Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0215
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    29   3.1  

>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 624 ILKPVNLVNYKGLNKYFIPKKYQSTLNQNNATNTSRHSWTFHLEK 490
           +L+P NL+N KG N  F  ++    + Q+  T T R S T  + K
Sbjct: 275 VLRPPNLINAKGFNMSFNKEEINEAIYQSQLT-TRRVSATHAIAK 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,883
Number of Sequences: 37544
Number of extensions: 197539
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)