Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0215
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09)                  29   2.4  
SB_31369| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09)
          Length = 357

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 531 TNTSRHSWTFHLEKLLSILYWLLVSY 454
           T TS H W   L ++L +L++LLVS+
Sbjct: 229 TPTSTHLWVLSLTEVLHLLFFLLVSW 254


>SB_31369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 140 FA*NVEYWSR*IKHEYRLYKKNYHLFKKQ-RCNTAGPYNVIV 262
           F    + W R +K   RL ++ Y  +KK  +CN+ G + + V
Sbjct: 77  FQTKTDTWGRGLKPVLRLIRETYTYYKKHYQCNSNGKWKMTV 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,863
Number of Sequences: 59808
Number of extensions: 254236
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)