Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0215
         (635 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   1.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.1  
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   8.1  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 185  YRLYKKNYHLFKKQRCNTAGPYNV 256
            YRL KK YHL+ K+   + GP+ V
Sbjct: 981  YRLVKKKYHLYVKK---STGPHAV 1001


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 168 LDQYSTFQANYIDLYDSLSKHINSLH 91
           L +Y+  +A+Y+ L D +S   NS H
Sbjct: 344 LYRYNFAKADYVKLNDMISMFNNSFH 369


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 576 FIPKKYQSTLNQNNATNTSRHSWTFHLEKLLSILYWLLVSY 454
           ++P+     L Q +A    + SW F +  +L +++++L  Y
Sbjct: 372 YLPQISIILLQQLSAAMKLKLSWVFRVSDILILVHFMLDPY 412


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,542
Number of Sequences: 2352
Number of extensions: 11098
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)