Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0214
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    96   5e-21
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    78   1e-15
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    27   3.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   4.3  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   5.7  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   7.5  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.5  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   7.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 43/78 (55%), Positives = 60/78 (76%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP+DLLDRM+I++T PYS  E+K+IL IRC+EED  M   AL  L+ +  ETSLRYA+
Sbjct: 338 HGIPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLRYAL 397

Query: 191 QLITTASLVAKRRKAAEV 244
            LI++++ VA +RK+A +
Sbjct: 398 LLISSSNQVALKRKSATI 415



 Score = 33.1 bits (72), Expect = 0.037
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 256 VKKVYSLFLDEHRSEQFLKEYQDEFMF-NDGSGDASQ 363
           +++VY LFLD+ RS ++L+EY   ++  N+ S   +Q
Sbjct: 420 IRRVYELFLDQKRSVEYLEEYGKNYITENEWSASGAQ 456


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 36/81 (44%), Positives = 54/81 (66%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP DLLDR++IV T PYS+SE++ IL IR + E+  ++ + L  L +  + TSLRY I
Sbjct: 349 HGIPTDLLDRLLIVRTLPYSESEIRSILQIRAKVENIILTDECLDKLAQEGSRTSLRYVI 408

Query: 191 QLITTASLVAKRRKAAEVSME 253
           QL+T  S++A      E+ ++
Sbjct: 409 QLLTPVSIIASLHGNKEIGVQ 429


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 199  DQLYGITQ*RFRGDPRQNCQSVG*HLTVLFFATYIE 92
            +Q++G+T+    G P +N +S+   L +LF  T+ E
Sbjct: 1414 NQIFGLTKLGLNGGPNKNFRSIRNALVLLFTMTFGE 1449


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 193 ADHYGFARRQETEG-G*GQYGSVKKVYSLFLDEHRSEQFLKEYQDEFMFNDGSGDASQVM 369
           A++ G  + Q  E  G G +  V K YS+   EH + + +++Y+       G      +M
Sbjct: 57  ANYPGLEKYQLIENLGDGAFSQVYKAYSIDRKEHVAVKVIRKYEMNKKQRQGVFKEVNIM 116

Query: 370 MEVSQ*KNENIFLQMTLFSFTLRKIYY 450
             V   K++N+   + LF F   + +Y
Sbjct: 117 RRV---KHKNV---VNLFDFVETEDFY 137


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 23  LDLLDRMIIVATSPYSQSELKDILNIR 103
           LDLLD+     TSP S  E K +L ++
Sbjct: 217 LDLLDQSDFSLTSPSSAKEFKQLLTLK 243


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 295 NDARPRTASRPFSRFHTDLSRLPSLGDERSRSDQ 194
           N +RPR    PF+R        P++GD+ S S +
Sbjct: 23  NISRPRKYIPPFARDKPSAGAAPAVGDDESVSSR 56


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 410 CRKMFSFFY*DTSIITCDASPEPSLNINSSWYSFKN 303
           C     FF  +  I    +SP PSLN   SW +F N
Sbjct: 111 CAGTLGFFSENGPIEISQSSPSPSLN-PESWTNFAN 145


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +1

Query: 244 QYGSVKKVYSLFLDEHRSEQFLKEYQDEFMFNDGSGDASQVMMEVSQ*KNENIFLQMTLF 423
           QY    K   L LD+H ++  L E    +     +G+  + +  V   K  ++ L M + 
Sbjct: 479 QYSDAVKTLGLLLDDHENDPSLSELSWCYF---KTGNLPKAISTVE--KCLDVLLSMDVE 533

Query: 424 SFTLRKIYYFY 456
            F + + YY Y
Sbjct: 534 RFKIAEAYYRY 544


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 519 THVSLSLAIQRFFHCFHNYIEEKIIYIISVVRGPY 623
           T + L +A    +H    +IE+  +YI   +R  Y
Sbjct: 345 TGLDLEMAFNEHYHEVMEFIEKLFLYIFKTIREKY 379


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 68  SQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAIQLITTAS 211
           S  E   +  ++   ED + +   L  + + +TET LRY   L  T S
Sbjct: 67  SSLEENKLTKLKAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTLS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,341
Number of Sequences: 5004
Number of extensions: 54165
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)