Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0214
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0608 - 4399252-4399894,4401640-4402427 103 1e-22
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 85 5e-17
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 75 5e-14
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 74 9e-14
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 2.6
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 29 3.4
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 103 bits (248), Expect = 1e-22
Identities = 45/81 (55%), Positives = 63/81 (77%)
Frame = +2
Query: 11 HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
HGIP D LDR++I+ T PY++ +++ IL+IRC+EED +MSADA +LT++ ETSLRYAI
Sbjct: 354 HGIPPDFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAI 413
Query: 191 QLITTASLVAKRRKAAEVSME 253
LIT+A+L ++RK V ME
Sbjct: 414 HLITSAALACQKRKGKVVEME 434
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 220 QETEGG*GQYGSVKKVYSLFLDEHRSEQFLKEYQDEFMFNDGSGDASQVMME 375
Q+ +G + + +VY LFLD RS Q+L EYQ ++MFN+ G+A M+
Sbjct: 424 QKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEAGDDAMQ 475
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 85.0 bits (201), Expect = 5e-17
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMS-ADALTVLTRVATETSLRYA 187
HGIP D L+R++I+ T PY++ ++ +L+IRC+EED +MS A A +LT++ ET+LRYA
Sbjct: 236 HGIPPDFLNRLLIITTQPYTEDDIPKVLDIRCDEEDVEMSTAYAKVLLTKIGVETALRYA 295
Query: 188 IQLITTASLVAKRRKAAEVSME 253
I LIT+A+L ++ V ME
Sbjct: 296 IHLITSAALAWQKHMGKIVEME 317
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 256 VKKVYSLFLDEHRSEQFLKEYQDEFMFND 342
+ +VY LFLD RS Q+L EYQ ++MFN+
Sbjct: 319 ISRVYQLFLDVKRSAQYLMEYQSQYMFNE 347
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/79 (43%), Positives = 54/79 (68%)
Frame = +2
Query: 11 HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
HGIP+DLLDR++I+ T Y +E+ IL IR + E+ ++ ++L L + +TSLR+AI
Sbjct: 347 HGIPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAI 406
Query: 191 QLITTASLVAKRRKAAEVS 247
QL++ AS+VAK ++S
Sbjct: 407 QLLSPASVVAKANGREKIS 425
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 74.1 bits (174), Expect = 9e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +2
Query: 11 HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
HGIP+DLLDR++I+ T Y +E+ IL IR + E+ + ++L L + +TSLR+AI
Sbjct: 287 HGIPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIDIDEESLAFLGEIGQQTSLRHAI 346
Query: 191 QLITTASLVAKRRKAAEVS 247
QL++ AS+VAK ++S
Sbjct: 347 QLLSPASVVAKANGREKIS 365
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 267 LLAVLGRASFRAVFEGVPGRVYV*RWFRRCIASDDGSISVKE*KHL 404
+LA +GR + A FE V RWFR+ ++ +IS+ HL
Sbjct: 499 MLASIGRGHYDAAFETGSIESQVLRWFRKASSTIVANISIDATAHL 544
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 512 TINSCFFKSCNTT----FLSLLPQLH*RE-NNLHHFCGKGSVFAQTLKKSCFEQ 658
T++ FKSC L LL LH + + L FCG S Q LKK FE+
Sbjct: 702 TLSLYHFKSCTVVPSLWLLPLLENLHIKGWDALVKFCGSSSANFQALKKLHFER 755
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,147
Number of Sequences: 37544
Number of extensions: 342467
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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