Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0214
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57353| Best HMM Match : TIP49 (HMM E-Value=0)                      118   4e-27
SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21)                 81   8e-16
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            30   1.5  
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 30   2.0  
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)                   29   3.4  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   29   3.4  

>SB_57353| Best HMM Match : TIP49 (HMM E-Value=0)
          Length = 283

 Score =  118 bits (284), Expect = 4e-27
 Identities = 54/85 (63%), Positives = 70/85 (82%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIPLDLLDR++I++T PY + +L+ IL IRCEEED +MS DA+ VLT++A ETSLRY+I
Sbjct: 155 HGIPLDLLDRLLIISTHPYEEKDLRHILTIRCEEEDVEMSDDAMMVLTKIAQETSLRYSI 214

Query: 191 QLITTASLVAKRRKAAEVSMEA*KR 265
           QLIT ASLV ++RK  EV+M+  KR
Sbjct: 215 QLITAASLVCRKRKGTEVAMDDIKR 239



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 256 VKKVYSLFLDEHRSEQFLKEYQDEFMFNDGS 348
           +K+VYSLF DE RS QFLKEYQ EFMFN+ S
Sbjct: 237 IKRVYSLFFDESRSTQFLKEYQQEFMFNEES 267


>SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21)
          Length = 150

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/71 (52%), Positives = 53/71 (74%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIPLDLLDR++IV T PYSQ E+  I+ IR + E  Q+  ++L +L    T+T+LRYA+
Sbjct: 42  HGIPLDLLDRVMIVRTLPYSQDEMMQIIKIRAQIEGIQVDDESLELLGETGTKTTLRYAV 101

Query: 191 QLITTASLVAK 223
           QL+T A+L+A+
Sbjct: 102 QLLTPANLLAR 112


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 362 CDAS-PEPSLNINSSWYSFKNCSERCSS 282
           CDAS P P + +  S    K C ERC S
Sbjct: 41  CDASIPPPRMEVTFSMQKLKTCDERCRS 68


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 316 TPSKTARNDARPRTASRPFSRFHTDLSRLPSLGDERSRSDQLYGITQ 176
           TP+ T +ND++P   S  +S  ++  SR    G    +S   YG+ +
Sbjct: 30  TPNTTRKNDSKPSGGSYDWSYLNSGSSRFTYEGRNADKSSLSYGLPE 76


>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
          Length = 348

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 322 PGTPSKTARNDARPRTASRPFSRFHTDLSRLPSLGDERSRSDQLYGITQ 176
           P T     + D  P   + PFSR HT ++  P   D       L  I+Q
Sbjct: 215 PKTQRSALKGDPTPPNEAAPFSRVHTVMAAAPEHTDASEHGALLQEISQ 263


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = -1

Query: 298 RNDARPRTASRPFSRFHTDLSRLPSLGDERSR 203
           R  ARPR ASRP  R +T  SR  S   E SR
Sbjct: 150 RQAARPRQASRPRPRGNTKTSRKTSHKTETSR 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,315,828
Number of Sequences: 59808
Number of extensions: 403815
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)