Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0214
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb (recombi...    73   1e-13
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...    51   7e-07
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   3.0  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z67881-2|CAE17760.1|   76|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z32683-7|CAA83618.1|  113|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb
           (recombination protein) homologprotein 2 protein.
          Length = 448

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP D LDRM+I+   PY++ +   IL+IRC+EE  ++   AL +L ++   TSLRY I
Sbjct: 340 HGIPSDFLDRMLIINAIPYTKEDTAKILSIRCDEEGVKLQPTALDLLVKLQEATSLRYCI 399

Query: 191 QLITTASLVAKRRKAAEVSME 253
            LI  + ++  R KA  V+ +
Sbjct: 400 HLIAASEVIRIRSKAEIVTTD 420


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 23/62 (37%), Positives = 39/62 (62%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP ++LDR++I+ T  Y++ +++ IL  R E E+ Q    A  +LTR+  +T  R  I
Sbjct: 366 HGIPPEMLDRLMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTRLCAQTCGREVI 425

Query: 191 QL 196
           ++
Sbjct: 426 EV 427


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 431  VKLNSVICRKMFSFFY*DTSIITCDASPEPSLNINSSWYSFKNCSERCSSKNSE 270
            V+ N  IC  + +       + TC  S  PS  I   W S   C++ C S   E
Sbjct: 1073 VEGNQHICGPLTTAVADPDKLNTCGVSCCPSAGIWGEWVSVSGCNDTCGSCGQE 1126


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
 Frame = -3

Query: 311 FKNCSE-------RCSSKN-SE*TFFTLPY*PQPPSV-SWRRAKP**SAVWHNAMTFPWR 159
           F NC E       R  SK  S   F TLPY        SWRRAK   SA    +    ++
Sbjct: 282 FSNCGEHKDFMPNRIPSKGRSMMDFSTLPYEDSGSRYESWRRAKKFISAFSQKSHQDLYK 341

Query: 158 PASELSKRRLTSDSPL 111
            A ++ KR+ +S S L
Sbjct: 342 SAPKIGKRKASSTSAL 357


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
 Frame = -3

Query: 311 FKNCSE-------RCSSKN-SE*TFFTLPY*PQPPSV-SWRRAKP**SAVWHNAMTFPWR 159
           F NC E       R  SK  S   F TLPY        SWRRAK   SA    +    ++
Sbjct: 282 FSNCGEHKDFMPNRIPSKGRSMMDFSTLPYEDSGSRYESWRRAKKFISAFSQKSHQDLYK 341

Query: 158 PASELSKRRLTSDSPL 111
            A ++ KR+ +S S L
Sbjct: 342 SAPKIGKRKASSTSAL 357


>Z67881-2|CAE17760.1|   76|Caenorhabditis elegans Hypothetical
           protein C52G5.3 protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 256 VKKVYSLFLDEHRSEQFLKEYQDEFMFNDGSGDASQVMMEV 378
           V+K+Y   +D+   EQ ++E     M ++ + DAS+ +ME+
Sbjct: 6   VEKIYEK-IDKELGEQHVEEVVKNLMVSENNEDASRQLMEL 45


>Z32683-7|CAA83618.1|  113|Caenorhabditis elegans Hypothetical
           protein R07E5.11 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 100 YIEYVLELTLGVRRGGHDDHPVEQVQRY 17
           Y + + E+TL   RGGHD  P ++   Y
Sbjct: 25  YEDSMAEVTLNETRGGHDSDPFDRSGEY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,691
Number of Sequences: 27780
Number of extensions: 308306
Number of successful extensions: 743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)