Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0214
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-...    95   3e-20
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    93   1e-19
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr...    72   4e-13
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden...    29   2.1  
At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein     29   2.8  

>At5g67630.1 68418.m08527 DNA helicase, putative similar to
           RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
           reptin [Drosophila melanogaster] GI:7243682
          Length = 469

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 43/88 (48%), Positives = 63/88 (71%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP+DLLDR++I+ T PY+  +++ IL IRC+EED +M+ +A  +LT +  +TSLRYAI
Sbjct: 341 HGIPIDLLDRLLIITTQPYTDDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAI 400

Query: 191 QLITTASLVAKRRKAAEVSMEA*KRSTR 274
            LIT A+L  ++RK   V +E  +R  R
Sbjct: 401 HLITAAALSCQKRKGKVVEVEDIQRVYR 428



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +1

Query: 220 QETEGG*GQYGSVKKVYSLFLDEHRSEQFLKEYQDEFMFND 342
           Q+ +G   +   +++VY LFLD  RS Q+L EYQ ++MF++
Sbjct: 411 QKRKGKVVEVEDIQRVYRLFLDVRRSMQYLVEYQSQYMFSE 451


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 42/88 (47%), Positives = 61/88 (69%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HGIP+D LDR++I+ T PY+Q E+++IL IRC+EED +M+ +A  +LT +   TSLRYAI
Sbjct: 342 HGIPIDFLDRLLIITTQPYTQDEIRNILEIRCQEEDVEMNEEAKQLLTLIGCNTSLRYAI 401

Query: 191 QLITTASLVAKRRKAAEVSMEA*KRSTR 274
            LI  A+L   +RK   V ++  +R  R
Sbjct: 402 HLINAAALACLKRKGKVVEIQDIERVYR 429



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 256 VKKVYSLFLDEHRSEQFLKEYQDEFMFN 339
           +++VY LFLD  RS Q+L E++ E++F+
Sbjct: 424 IERVYRLFLDTKRSMQYLVEHESEYLFS 451


>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
           protein-related similar to TATA box-binding
           protein-interacting protein SP:O35753 from [ Mus
           musculus]
          Length = 458

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 31/71 (43%), Positives = 49/71 (69%)
 Frame = +2

Query: 11  HGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAI 190
           HG+P+DLLDR++I+ T  Y  SE+  I+ IR + E+  +  + L +L  +   TSLR+A+
Sbjct: 350 HGVPIDLLDRLVIIRTQIYDPSEMIQIIAIRAQVEELTVDEECLVLLGEIGQRTSLRHAV 409

Query: 191 QLITTASLVAK 223
           QL++ AS+VAK
Sbjct: 410 QLLSPASIVAK 420


>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
           identical to SKP1 interacting partner 2 GI:10716949 from
           [Arabidopsis thaliana]
          Length = 527

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 5   TRHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLT 154
           +RH + LD  D +    TS +++ +    L +RC+ +   +S +AL +++
Sbjct: 80  SRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMIS 129


>At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein
          Length = 476

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 645 LFFKVWANTDPLPQK*CRLFSLQCSCGSNERNVVLQ 538
           LFFK+W   D    K C +   QC   +++R V  Q
Sbjct: 15  LFFKIWKLIDSKQDKDCYILDYQCHKPTDDRMVSTQ 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,153,424
Number of Sequences: 28952
Number of extensions: 275589
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)