Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.52 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   1.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.5  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 231 YILSKHKHHDTRQRHLVTSPYRKKISSFVDYLNLKDQRSSTSCS 362
           Y  S+H HH  + R    SPY   +++     + + Q++S   S
Sbjct: 48  YASSQHHHHHLQARPPQDSPYDASVAAACKLYSSEGQQNSNYSS 91


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 394 ICSFFFYCLDG 426
           IC  F+YC+DG
Sbjct: 121 ICDKFYYCVDG 131


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 154 PLIKIFLRFNLVFY 113
           P +KIFL F  +FY
Sbjct: 488 PDVKIFLPFRFLFY 501


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 397 CSFFFYCL 420
           CS F+YCL
Sbjct: 434 CSIFYYCL 441


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,157
Number of Sequences: 336
Number of extensions: 3787
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)