Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   3.9  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   5.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.8  

>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 360 NMTCWISGL*DSGNLRRRRSFSCTEM*QGAFVLY 259
           N+ CW   + +    R  R F CT+      V+Y
Sbjct: 177 NILCWTGDVCEDEAFRGSRQFHCTKFPSAVLVMY 210


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 418 SNKRKSCILYEHIFITHLGEHDVLDLW 338
           +NK   C+L   IF + LG+   +D W
Sbjct: 337 NNKDFVCVLMSEIFPSRLGQFSDIDAW 363


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 177 KTYNNTPFT*PKIQLSLCYILSKHKHHDTRQRHLVTSPY 293
           + +++ PFT P    S  +  S      T +R+ +TSPY
Sbjct: 693 RNFSSPPFTRPASPSSSKFRFSSSSFQSTIRRNSLTSPY 731


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 222 SLCYILSKHKHHDTRQRHLVTSPYRKK 302
           S CY+ +K K H   + HL++  YR K
Sbjct: 11  SRCYVCAKCKTHLAFKGHLLSHDYRGK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,239
Number of Sequences: 5004
Number of extensions: 56519
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)