Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0329 + 7311721-7311834,7312252-7312683                           30   1.7  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    28   7.0  
01_03_0266 + 14430306-14430714,14430880-14430884                       28   7.0  

>09_02_0329 + 7311721-7311834,7312252-7312683
          Length = 181

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +3

Query: 273 HLVTSPYRKKISSFVDYLNLKDQRSSTSCSPKCVIKMCSYNMQLFLLLLRWVDGLTAHLV 452
           H  ++ YR+ ++ FV + +  D++S  S    C  + C  N Q+    +   D + AHL+
Sbjct: 48  HRSSTEYREGVTEFVTFAD-NDRKSRMSMHMLCPCRDCK-NEQM----IEDSDEMHAHLI 101

Query: 453 LNGYWSP*TSTT 488
           +NG+    T  T
Sbjct: 102 MNGFMKKYTCWT 113


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 505 LGYKF*DLSIVTTGWPHPSKPGTA 576
           LG++  D+++  TGWP  ++PG A
Sbjct: 253 LGFEDVDITVGETGWPTKAEPGQA 276


>01_03_0266 + 14430306-14430714,14430880-14430884
          Length = 137

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 470 PIDIYNVNAPPTLDISSKISV*LQRAGPTLPNRERLYWLSRAEIRAG 610
           P+    V+AP +   ++  +V  +R  P +  RE  YW+ + + R G
Sbjct: 31  PVQSSTVSAPSSSTPAADEAVSAERLEPRVEQREGRYWVLKEKYRTG 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,539
Number of Sequences: 37544
Number of extensions: 350296
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)