Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_54245| Best HMM Match : CBFNT (HMM E-Value=5.8)                     28   7.2  
SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)              27   9.5  

>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 234 ILSKHKHHDTRQRHLVTSPYRKKISSFVDYLNLKDQRSSTSCS 362
           I+S+H HHD     L+ S  R K    VD L ++    S+ CS
Sbjct: 110 IISRHHHHDISLT-LLGSAARGKRDESVDGLGIQSSSESSICS 151


>SB_54245| Best HMM Match : CBFNT (HMM E-Value=5.8)
          Length = 177

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 LSKHKHHDTRQRHLVTSPYRKKISSFVDYLNLKDQRSSTSC 359
           +S H+HH  R  H+V  P    + SF D  + +    STSC
Sbjct: 131 ISHHQHHQQRAPHIVRKPV-STLRSF-DGFSRRGVTRSTSC 169


>SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)
          Length = 627

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 SLCYILSKHKHHDTRQRHLVTSPYRKKISSFVDYLNL 332
           S+C +L   + H T  R L TS   K ISS V Y+++
Sbjct: 335 SMCALLRMRRSHKTVFRELQTSVSVKYISSLVLYVSV 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,582,289
Number of Sequences: 59808
Number of extensions: 421517
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)