Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    35   0.042
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    27   8.4  

>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 232 IYCQNINITIQDKGTLLHLRTGKRSPP 312
           +YC+ +  + QD+  L HLR+G+R PP
Sbjct: 249 VYCREVGSSSQDRSHLTHLRSGERRPP 275


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 SPNPKYNYPCVIYCQNINITIQDKGT 276
           S  PK+ Y  V+ C+N+ I I D  T
Sbjct: 405 SAAPKFKYCTVLDCENVGIYITDNAT 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,741
Number of Sequences: 27780
Number of extensions: 321417
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)