Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 375 IKMCSYNMQLFLLLLRWVDGLTAHLVLNGY 464
           +K  +Y    +  +L W+ GL++ L + GY
Sbjct: 517 VKYLTYEYPWWSHVLGWLCGLSSMLCIPGY 546


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 375 IKMCSYNMQLFLLLLRWVDGLTAHLVLNGY 464
           +K  +Y    +  +L W+ GL++ L + GY
Sbjct: 570 VKYLTYEYPWWSHVLGWLCGLSSMLCIPGY 599


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 193 HLSPNPKYNYPCV 231
           HLSP+   NY CV
Sbjct: 674 HLSPDHNGNYSCV 686


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 264 RQRHLVTSPYRKKISSFVDYLNLKDQR 344
           +Q HL+ +  +KK S+ +  L L+ QR
Sbjct: 159 QQTHLLQTADKKKASAPLQQLALQQQR 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,809
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)