Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0213
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32161.1 68418.m03792 hypothetical protein                          28   4.4  
At2g30505.1 68415.m03716 Expressed protein                             28   5.9  
At1g53885.1 68414.m06134 senescence-associated protein-related s...    27   7.8  

>At5g32161.1 68418.m03792 hypothetical protein 
          Length = 193

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 195 PFT*PKIQLSLCYILSKHKHHDTRQRHLVTSPYRKKISSFVDYLNLKDQR 344
           PFT P+       I++ H HH +   H +TS    +I +  D L+ + +R
Sbjct: 100 PFTLPRYSTPWSSIITHHHHHQS-TGHSITSSQSTQIRTQPDKLSTRKKR 148


>At2g30505.1 68415.m03716 Expressed protein
          Length = 321

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 297 KKISSFVDYLNLKDQR-SSTSCSPKCVIKMCSYNMQLFLLLLRWVDGLTAH 446
           +K  SFVD++  +D+R  ++ C  KC    C +   + +++L  + GL+A+
Sbjct: 111 RKSGSFVDHIGQEDKRICASGCFRKCCACTCMFVSVVLIIVL--LVGLSAN 159


>At1g53885.1 68414.m06134 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana];
          Length = 126

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 276 LVTSPYRKKISSFVDYLNLKDQRSSTSCSPKCVIKMCSY-NMQL 404
           LVT   R+K+++ V   +L+  RS+ + S  C +K C   N QL
Sbjct: 10  LVTRDSREKLNNIVIKSSLRLNRSNPNISELCFLKTCHLCNKQL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,483
Number of Sequences: 28952
Number of extensions: 292227
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)