Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0212
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    29   0.63 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 522 SIITLSFVTTRTSVLNNRN-----NTIEITIARFNYSNRYFIS 409
           S+IT   V  RTS LN  N     +T E+ +ARF+ S  YF S
Sbjct: 25  SLITEGSVLQRTSDLNVPNLQMFGHTAEVLVARFDPSGSYFAS 67


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -3

Query: 262 YGTVHNFILN----DR*IRKIFNKINTVA*ISAAIGEYCINNSLHDNYL 128
           YG +H   L+    D   RKI N  + +  I  A G  C+N+   D +L
Sbjct: 564 YGIIHEKKLSHAFLDAVNRKILNSSDAITSIPLAFGAICLNSQGFDLFL 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,528
Number of Sequences: 5004
Number of extensions: 40858
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)