Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0212
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0738 + 24000422-24000952,24001491-24002237                       29   2.6  
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    29   3.4  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    28   6.0  

>06_03_0738 + 24000422-24000952,24001491-24002237
          Length = 425

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 439 SCYCYFNCIISVV*NTSSRGHERQGYNRQLNTVKTKIIHANLYREGSFKINGYVFRAP 612
           SC   +NC   ++ NT        G    +  +  K  H N+YR    KI+G    AP
Sbjct: 165 SCAKNYNC--KLLPNTLVLNTVNDGVVSGITLLNAKFFHMNIYRCKDIKISGVTINAP 220


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 648 NCHRLKYGIG-MYWSPEHITIYFKTTLTV*VCMNYF 544
           N +R +Y  G +YW   H  + F   LT  +C+  F
Sbjct: 533 NVYRTRYDTGGLYWPIAHNAVIFSLVLTQIICLGVF 568


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 648 NCHRLKYGIG-MYWSPEHITIYFKTTLTV*VCMNYF 544
           N +  KY  G +YW   H T  F   LT  +C+  F
Sbjct: 527 NVYCTKYDTGGLYWPIAHYTTIFSIVLTQIICLGVF 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,693
Number of Sequences: 37544
Number of extensions: 208167
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)