Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0212
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   33   0.22 
SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)                    30   2.0  
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)               30   2.0  
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           28   8.1  

>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 606 PEHITIYFKTTLTV*VCMNYFSFNSIQLSIITLSFVTTRTSVLNNRNNTIEITIARF 436
           P  IT  + TT+T  +  NY +  +I    IT ++ TT T+ + N   T  ITI  +
Sbjct: 519 PITITTNYTTTVTTTITTNYTTIVTI---TITTNYTTTVTTTITNYTTTFTITITNY 572


>SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)
          Length = 124

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 507 SFVTTRTSVLNNRNNTIEITIARFNYSN 424
           SF+ T   ++NN+NN I IT+   N S+
Sbjct: 86  SFIITIVIIINNKNNIITITVTNTNSSS 113


>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
          Length = 383

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 507 SFVTTRTSVLNNRNNTIEITIARFNYSN 424
           SF+ T   ++NN+NN I IT+   N S+
Sbjct: 345 SFIITIVIIINNKNNIITITVTNTNSSS 372


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 510 LSFVTTRTSVLNNRNNTIEITIARFNYSNRYFISLLNCS*KSFVHNIIS 364
           LS+         ++ NT+E+  A F+   ++F  L     KSFV N+IS
Sbjct: 193 LSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMIS 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,756
Number of Sequences: 59808
Number of extensions: 276292
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)