Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0212
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.6  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   6.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.3  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 403 KLFLEKFRAQYYFLNYITKM 344
           KL+   +R  YY +NYI ++
Sbjct: 98  KLYCNNYRKLYYNINYIEQI 117


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -2

Query: 389 KVSCTILFLKLYYKNDIIFNIVLGTIIKFKKIQLIIMLNELFVWYGT*FYFKRSINKKDF 210
           K     LF+ L   ND I+NI+    +       + M+  +F    +  YF++++N+ +F
Sbjct: 2   KYESIALFISLIILNDEIYNIIASPQL---NNPTLFMIGGVFSNNKSKKYFEQTLNELNF 58


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 648 NCHRLKYGIGM 616
           +CH+ KYGI M
Sbjct: 42  SCHKCKYGIAM 52


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 436 ESCYCYFNCII 468
           E   CYFNC++
Sbjct: 66  EKLKCYFNCVL 76


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 403 KLFLEKFRAQYYFLNYITKM 344
           KL+   ++  YY +NYI ++
Sbjct: 98  KLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 403 KLFLEKFRAQYYFLNYITKM 344
           KL+   ++  YY +NYI ++
Sbjct: 98  KLYCNNYKKLYYNINYIEQI 117


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 489 TSVLNNRNNT 460
           T V+NNRNNT
Sbjct: 486 TIVINNRNNT 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,852
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)