Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0211
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 166 3e-42
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 140 2e-34
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 69 8e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 64 1e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 6e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 61 1e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 2e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 1e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 3e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 4e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 52 1e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 51 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 51 2e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 50 2e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 50 3e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 48 1e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 46 7e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 1e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 2e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 8e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 29 0.63
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.1
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.5
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 3.4
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 3.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 4.4
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 26 4.4
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 26 4.4
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 5.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 7.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 166 bits (403), Expect = 3e-42
Identities = 77/110 (70%), Positives = 91/110 (82%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
V+ FMRDP+RILV+K+ELTLEGIKQFY+A+E EEWKL+TLCDLY+T+++ QAVIFCNTR
Sbjct: 209 VTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTR 268
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
RKVDWLTE + RDFTVS+MHGDMD F GSSR+LITTDLL
Sbjct: 269 RKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLL 318
Score = 121 bits (291), Expect = 1e-28
Identities = 62/129 (48%), Positives = 84/129 (65%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
VR+D+ L++GVHVVVGTPGRV+DMI RAL + +++FVLDEADEMLSRGFKDQI +F
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIF 186
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
++L QV+LLSATMP DVLE L ++ L + + F + + + W
Sbjct: 187 QLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAV--EKEEW 244
Query: 370 KLCVTCMIH 396
KL C ++
Sbjct: 245 KLDTLCDLY 253
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 140 bits (338), Expect = 2e-34
Identities = 65/105 (61%), Positives = 82/105 (78%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
F +PVRILV+++ELTLEG+KQ++IA+E EEWK +TLCDLYDTL+I QAVIFCN+RRKVD
Sbjct: 215 FTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVD 274
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
WLTE M +FTV++MHG+M F G+SRVLI TD+
Sbjct: 275 WLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDI 319
Score = 98.7 bits (235), Expect = 7e-22
Identities = 50/129 (38%), Positives = 76/129 (58%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
V DI++L+ G HVV GTPGRV DMI R L +K+ +LDEADE+L++GFK+QI ++
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIY 188
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
+ L QV+++SAT+P DVLE + L +R L + L + + + + W
Sbjct: 189 RYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAV--EKEEW 246
Query: 370 KLCVTCMIH 396
K C ++
Sbjct: 247 KFDTLCDLY 255
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 583 WARGIDVQQVFL 618
WARGIDVQQV L
Sbjct: 320 WARGIDVQQVSL 331
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 68.5 bits (160), Expect = 8e-13
Identities = 34/99 (34%), Positives = 59/99 (59%)
Frame = +3
Query: 288 ILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMH 467
I ++ EEL++EGIKQ Y+ + EE K L +LY L+I Q++IFC + + + M
Sbjct: 314 IRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMT 373
Query: 468 LRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
TV+ + G+++ SF +G+S+VL+TT+++
Sbjct: 374 ADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 412
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXRALHANTIKLFVLDEADEML-SRGFKDQIXXVFKMLSADVQVILL 225
+V+GTPG V D++ R L A IK+FVLDEAD ML +G DQ + +L + Q++L
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLF 292
Query: 226 SATMPDDVLEYLD 264
SAT + V +Y +
Sbjct: 293 SATFSERVEKYAE 305
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
IR L GV + + TPGR+ DM+ + + VLDEAD ML GF+ QI + +
Sbjct: 239 IRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298
Query: 202 ADVQVILLSATMPDDV 249
D Q ++ SAT P +V
Sbjct: 299 PDRQTVMFSATWPKEV 314
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLE-GIKQFYIAIELEEWKLETLCDLYDTLSIA--QAVIFC 425
++R ++ D +++ V +L IKQ ++ + + D+ + L + +IF
Sbjct: 317 LARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFT 376
Query: 426 NTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
T+R D +T + + A+HGD F G S +++ TD+
Sbjct: 377 GTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.5 bits (145), Expect = 6e-11
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
++R IRQ++ G ++ TPGR+ D+I + IK VLDEAD ML GF+ QI +
Sbjct: 294 DIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
Query: 187 FK---MLSADV-QVILLSATMPDDV 249
+ M S + Q ++ SAT P D+
Sbjct: 354 VEGADMTSVEERQTLMFSATFPRDI 378
Score = 39.5 bits (88), Expect = 4e-04
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNT 431
++R F++D V + V + T E I Q + +E E K L D+ TL +IF T
Sbjct: 381 LARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVET 439
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITT 575
+R D LT+ + +F +++HGD + + F G + +++ T
Sbjct: 440 KRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVAT 487
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 61.3 bits (142), Expect = 1e-10
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+R+DI +L VH+VVGTPGRV D+ + FV+DEAD++LS F I +
Sbjct: 152 LRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
+ Q+ L SAT P V ++D
Sbjct: 212 SYFPKNRQISLYSATFPLIVKNFMD 236
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/94 (30%), Positives = 48/94 (51%)
Frame = +3
Query: 303 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 482
+ELTL G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 483 VSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
H M +F G R L+ +DLL
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITX---RALHANTIKLFVLDEADEMLSRGFKDQIX 180
+++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M GF+ Q+
Sbjct: 531 IKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVM 590
Query: 181 XVFKMLSADVQVILLSATMP 240
+ + D Q +L SAT P
Sbjct: 591 RIINNIRPDRQTVLFSATFP 610
Score = 36.3 bits (80), Expect = 0.004
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWK----LETLCDLYDTLSIAQAVIF 422
++R ++ PV I V + ++Q + + EE K LE L +LY+ + ++F
Sbjct: 616 LARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQLDVRTLVF 674
Query: 423 CNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
+ + D L + R +T +++HG D + + G VLI T ++
Sbjct: 675 VDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVV 728
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEML-SRGFKDQIXXVFK 192
E + H+VV TPGR+ ++ + L N++K FVLDE D++L S + I VF+
Sbjct: 165 EAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFR 224
Query: 193 MLSADVQVILLSATMPDDV 249
QV++ SAT+ +++
Sbjct: 225 ATPPQKQVMMFSATLSNEI 243
Score = 48.8 bits (111), Expect = 7e-07
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
+ + FM++P+ I V E +LTL G++Q Y+ +E E+ K + DL D+L Q VIF +
Sbjct: 246 ICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKS 304
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ + L + +F +HG + +F R+ + TD+ G
Sbjct: 305 VSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFG 356
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 4 HEVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXX 183
H E Q+ G H+VV TPGR+ D + R + V+DEAD ML GF+D +
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNK 422
Query: 184 VFKML 198
+ L
Sbjct: 423 ILSSL 427
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 52.8 bits (121), Expect = 4e-08
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 25 RQLESGVHVVVGTPGRVYD-MITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
++L +V+ TPGR D M + I++ V+DEAD ML GF D++ + +
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP 434
Query: 202 ADVQVILLSATMPDDV 249
Q +L SATM D V
Sbjct: 435 KSRQTMLFSATMTDKV 450
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHA----NTIKLFVLDEADEMLSRGFKDQI 177
+R+ I L HVVV TPGR+ D+I IK V+DEAD +LS F D +
Sbjct: 116 IRQSI-DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDL 174
Query: 178 XXVFKML--SADVQVILLSATMPDDV 249
F +L S D Q +L +AT+ D +
Sbjct: 175 DDCFSVLPASEDRQTLLFTATVTDAI 200
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ E L +VV TPGR + L ++I+ V DEAD + GF Q+ +
Sbjct: 179 LEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
Query: 190 KMLSADVQVILLSATMPDDVLEYLDA 267
L Q +L SAT+P ++++ A
Sbjct: 239 HALPTSRQTLLFSATLPRTLVDFAKA 264
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +1
Query: 13 REDIRQLESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
R + +L GV+++V TPGR+ D + + ++ V+DEAD +L GF+D++ +
Sbjct: 202 RAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIM 261
Query: 190 KML-SADVQVILLSATMPDDV 249
K+L S + Q +L SAT V
Sbjct: 262 KILPSENRQTLLFSATQTTKV 282
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +1
Query: 34 ESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQ 213
E VV+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + + L +
Sbjct: 130 EKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 214 VILLSATMPDDVLEYL 261
L SATM D V +L
Sbjct: 188 TGLFSATMNDTVSSFL 203
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFK-----MLSADVQ 213
V++GTPGR+ D+I ++ + + VLDEAD ML GF+ I + + Q
Sbjct: 288 VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQ 347
Query: 214 VILLSATMPDDV 249
+ SAT P+ V
Sbjct: 348 TVFFSATWPESV 359
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDT-LSIA---QAVIFCNT 431
F++DPV+I + +EL + I Q ++ K L +L LS ++
Sbjct: 366 FLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVL 425
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+K E R + V +HGDM + + F G VL+ TD+
Sbjct: 426 YKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDV 475
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSA 204
++ GV++++GTPGR+ D + AL + ++ VLDE D ++ GF++ + + L +
Sbjct: 265 RIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLES 324
Query: 205 DVQVILLSATMP 240
+I ++P
Sbjct: 325 QSSIIKKDLSIP 336
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.0 bits (104), Expect = 5e-06
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHAN--TIKLFVLDEADEMLSRGFKDQIXX 183
V++ R L HVVV TPGR++ +I L N IK VLDEAD +L + +++
Sbjct: 232 VQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSK 291
Query: 184 VFKMLSADV----QVILLSATMPDDVLEYL 261
+ ++L + Q + SAT + + + L
Sbjct: 292 LLEILGNPMHTQRQTFIFSATFDEGLQQRL 321
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
HV+V TPGR+ D + + +K ++DEAD +L F I + K++ + + +L
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLL 225
Query: 223 LSATMPDDV 249
SATM V
Sbjct: 226 FSATMTSKV 234
Score = 31.9 bits (69), Expect = 0.089
Identities = 24/109 (22%), Positives = 45/109 (41%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
+ R + PVR+ V + T++ + Q Y+ + K L L + L+ +IF T
Sbjct: 237 LQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKH-KDTYLVYLVNELAGNSIIIFARTV 295
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + F+ +HG + + + F G+ L+ TD+
Sbjct: 296 NDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDV 344
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXX 183
++RE+ ++++ TPGR+ D + R L + + F+LDEAD ++ GF + I
Sbjct: 152 KMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILN 211
Query: 184 VFK-MLSADVQVILLSATMPDDV 249
+ + + + + + SATMP V
Sbjct: 212 IHEAVTTTKTRKLCFSATMPPKV 234
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLS 228
+V+ TP R + L + +K V+DEAD MLS G+ + + + + L Q L+S
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMS 202
Query: 229 ATMPDDV 249
AT+ ++
Sbjct: 203 ATLSKNI 209
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 37 SGVHVVVGTPGRVYDMITXRALHANT--IKLFVLDEADEMLSRGFKDQIXXVFKMLSADV 210
S ++++V TPGR+ I +A++ +T +++ +LDEAD +L GF+ + + L
Sbjct: 159 SRMNILVCTPGRLLQHID-QAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR 217
Query: 211 QVILLSATMPDDV 249
Q +L SAT V
Sbjct: 218 QTMLFSATQTKSV 230
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
+++E +L + +GTP R+ I L ++ FV+DEAD + GF +Q +
Sbjct: 155 KIQEKAPKLREKYDMCIGTPMRLVQAIQT-GLSFEKVEFFVMDEADRLFEPGFIEQTDHI 213
Query: 187 FK-MLSADVQVILLSATMPDDVLE 255
S+++ L SAT+P V E
Sbjct: 214 LSACTSSNICKSLFSATIPSRVEE 237
Score = 34.3 bits (75), Expect = 0.017
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 276 DPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIA-QAVIFCNTRRKVDWL 452
DP+RI+V ++ + I Q + + + K+ L + + + VIF + L
Sbjct: 245 DPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKAL 304
Query: 453 TESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
+ + V +HG++ + + F G VLI TDLL
Sbjct: 305 YTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLL 348
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 34 ESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
E + V+V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 258 ECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 671 GEYNFSRFGWPDHSLNDRRKTCCTSI 594
GE S FGW H+ ++RR T C ++
Sbjct: 224 GEIKLSDFGWSVHAPSNRRTTLCGTL 249
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +3
Query: 408 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDNVSVK*S*GSF--VLGSSRVLI 569
+A+IFC T++ V+++ +H D V+ GD+ + + + +F G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 570 TTDLLG 587
T G
Sbjct: 1477 ATKAFG 1482
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +3
Query: 408 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDNVSVK*S*GSF--VLGSSRVLI 569
+A+IFC T++ V+++ +H D V+ GD+ + + + +F G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 570 TTDLLG 587
T G
Sbjct: 1477 ATKAFG 1482
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 203 LMFKSYYSLLPCLMMYWSISMLYERSCTH 289
L+ SY+S +P Y+S +MLY S H
Sbjct: 84 LLVTSYFSYMPFAASYFSFTMLYIWSWKH 112
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 270 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 362
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Frame = +1
Query: 13 REDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDE-----ADEMLSRGFKDQI 177
++D+ + + + +G G+ + R + +L+ L E AD+ +G+K++I
Sbjct: 305 QQDVVTVANLQFIKLGVVGKGGSSMVYRIFSPDNSRLYALKEVNFINADQTTIQGYKNEI 364
Query: 178 XXVFKMLSADVQVILLSATMPDDVLEYLDAL*E 276
+ + LS + ++I L A +D L L+ + E
Sbjct: 365 -ALLRKLSGNDRIIKLYAAEVNDTLGQLNMVME 396
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 70 RVYDMITXRALHANTIKLFVLDEADEM 150
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 329 FNTFQGKLFLLYKYAYRISHKASRYSN 249
+N ++ K YK +YR +H A Y+N
Sbjct: 1629 YNAYKAKTAARYKASYRYTHDALVYNN 1655
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 616 GKLAVHQYHVPNKSVVIKTREEPSTKLPHDHFTLTLSMSPCIADTVKSRRC 464
GK V ++P ++I+ R + L D LT + S C + VK++RC
Sbjct: 15 GKGTVATDNIPIGKIIIRKRVDI---LSLDSANLTRTCSTCTEEKVKTQRC 62
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/103 (20%), Positives = 46/103 (44%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKM 195
E+IR ++ + G R D + A + + +EA+ + + +++ + +
Sbjct: 88 EEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGI 147
Query: 196 LSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKV 324
V+++L+ + DDV+ D Y YL+R +P K+
Sbjct: 148 GRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKM 190
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 354 EEWKLETLCDLYDTLSIAQAVI--FCNTRRKVDWLTESMHLRDFTVSAMHGDMDN 512
+EWKL+ + D YD ++ QAV R + DW + D V + G +D+
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW-NALKSVLDVCVRSNFGGIDS 195
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Frame = +2
Query: 278 SCTHTCTEGR----------AYPGRY*TILHCN*IRRMEAGNSV*PV*YTVYCTSCNFLQ 427
SC HTCT R Y + C+ R+ ++ T++C C ++
Sbjct: 73 SCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDCKQVR 132
Query: 428 HPSQ 439
HPS+
Sbjct: 133 HPSR 136
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 19 DIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQ 174
D+R +ESGV+ + T G + L+ + IK V E M G+ D+
Sbjct: 396 DVRYIESGVNRFIATSGYDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDR 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,627
Number of Sequences: 5004
Number of extensions: 63089
Number of successful extensions: 220
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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