Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0211
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 3e-36
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 77 1e-14
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 68 6e-12
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 68 6e-12
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 63 2e-10
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 63 2e-10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 5e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 54 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 53 3e-07
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 48 5e-06
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 44 9e-05
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 43 3e-04
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 42 6e-04
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 42 6e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 40 0.002
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 38 0.008
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 37 0.018
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 36 0.031
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 36 0.041
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7) 29 2.7
SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 29 3.5
SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0) 29 3.5
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 3.5
SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3) 28 8.1
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 28 8.1
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 149 bits (360), Expect = 3e-36
Identities = 68/105 (64%), Positives = 84/105 (80%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
FM DP+RILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I QAVIFCNT+RKVD
Sbjct: 191 FMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVD 250
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
WLTE M +FTV++MHGDM + F G SRVLI+TD+
Sbjct: 251 WLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDV 295
Score = 105 bits (252), Expect = 3e-23
Identities = 54/129 (41%), Positives = 78/129 (60%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ EDIR+L+ G H+V GTPGRV+DMI R L +IK+ VLDEADEML++GFK+QI V+
Sbjct: 105 IGEDIRKLDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVY 164
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
+ L QV+LLSAT+P ++LE L +R L + + F + + + W
Sbjct: 165 RYLPPATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAV--EREEW 222
Query: 370 KLCVTCMIH 396
K C ++
Sbjct: 223 KFDTLCDLY 231
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 144 bits (350), Expect = 4e-35
Identities = 71/110 (64%), Positives = 84/110 (76%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
V+ FMRD VRILV++EE+TLEGIKQF++ +E E+WKL+TLCDLY+TL+I QAVIF NTR
Sbjct: 281 VTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYETLTITQAVIFANTR 340
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
RKVDWL M +D TVS+MHGDM F GSSRVLITTDLL
Sbjct: 341 RKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLL 390
Score = 125 bits (301), Expect = 4e-29
Identities = 67/129 (51%), Positives = 83/129 (64%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
VRED +LE GVHVVVGTPGRV+DMI L+ IKLFVLDEADEMLSRGFKDQI VF
Sbjct: 199 VREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVF 258
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
L VQV+LLSATMP DVLE + + L +R+ + + + F + + + W
Sbjct: 259 TRLPTSVQVVLLSATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLV--EKEDW 316
Query: 370 KLCVTCMIH 396
KL C ++
Sbjct: 317 KLDTLCDLY 325
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/102 (37%), Positives = 60/102 (58%)
Frame = +3
Query: 276 DPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLT 455
+P+ I +++EE +L+ IKQ+Y+ + E K E LC++Y LSI Q V+FC+TRR WL
Sbjct: 302 NPIIIRLRREEESLDNIKQYYVVCKNSEDKFEALCNMYGVLSIGQCVVFCHTRRNAAWLA 361
Query: 456 ESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
E M V+ + G++ F LG ++LITT++
Sbjct: 362 EKMVKEGHAVALLSGEITIEQRIAVLERFRLGKEKLLITTNV 403
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 46 HVVVGTPGRVYDMITX-RALHANTIKLFVLDEADEMLS-RGFKDQIXXVFKMLSADVQVI 219
H+++GTPG + D I + + +FVLDEAD M++ +G +DQ + K L D QV+
Sbjct: 223 HIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVL 282
Query: 220 LLSATMPDDVLEYLDAL 270
L SAT +DV+++ + +
Sbjct: 283 LFSATYDEDVMKFAETV 299
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/84 (38%), Positives = 53/84 (63%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ ED + L+S H+ VGTPGRV +I + L ++++F+LDEAD++L F+ QI +F
Sbjct: 122 LEEDKKALKS-CHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIF 180
Query: 190 KMLSADVQVILLSATMPDDVLEYL 261
L + Q++ SAT P+ + +L
Sbjct: 181 SALPENKQMMAFSATYPEVLANHL 204
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
IR+LE GV + + TPGR+ DM+ R + VLDEAD ML GF+ QI + +
Sbjct: 176 IRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIR 235
Query: 202 ADVQVILLSATMPDDV 249
D Q ++ SAT P +V
Sbjct: 236 PDRQTLMWSATWPKEV 251
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +1
Query: 43 VHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
VHV+V TPGRV D++ + + ++ V+DEAD++LS FK + + K L + Q++L
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILL 232
Query: 223 LSATMPDDVLEY 258
SAT P V ++
Sbjct: 233 FSATFPISVRDF 244
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Frame = +3
Query: 270 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW 449
+R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I Q++IFCN+ ++V+
Sbjct: 249 LRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQINQSIIFCNSVQRVEL 306
Query: 450 LTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + F+ +H M F G R L+ +DL
Sbjct: 307 LARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDL 350
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +1
Query: 43 VHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
VHV+V TPGRV D++ + + ++ V+DEAD++LS FK + + K L + Q++L
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILL 232
Query: 223 LSATMPDDVLEY 258
SAT P V ++
Sbjct: 233 FSATFPISVRDF 244
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Frame = +3
Query: 270 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW 449
+R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I Q++IFCN+ ++V+
Sbjct: 249 LRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQINQSIIFCNSVQRVEL 306
Query: 450 LTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + F+ +H M F G R L+ +DL
Sbjct: 307 LARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDL 350
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
V +RQL+SG +++VGTPGR+ D I + ++ +LDEAD ML GF+ I +
Sbjct: 828 VSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIV 887
Query: 190 KML----SADVQVILLSATMPDDV 249
+ + ++ Q ++ SAT P+++
Sbjct: 888 ESMGMPDKSERQTLMFSATFPEEI 911
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSAD 207
QLE G H +VGTPGR+ D ++ ++ +I+ +LDEAD ML GF I + + +
Sbjct: 598 QLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMT 657
Query: 208 V----QVILLSATMPDDV 249
Q ++ SAT PD++
Sbjct: 658 AKESRQTLMFSATFPDEI 675
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
++ +R+L+ H++V TPGR+ DM+ + ++I+ VLDEAD ML GF+ QI +
Sbjct: 964 DIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRI 1023
Query: 187 FKMLSADV----QVILLSATMPDDV 249
S Q ++ SAT P ++
Sbjct: 1024 VDQDSMPKTGIRQTLMFSATFPKEI 1048
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +1
Query: 34 ESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQ 213
E GV V+V TPGR+ ++I+ +A+ + V+DE D ML GF+ Q+ + + LS Q
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQ 312
Query: 214 VILLSATMPDDV 249
+L SAT+P +
Sbjct: 313 TMLFSATIPPSI 324
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSAD- 207
+ SG+ V+VGTPGR+ D + L + +K VLDE D ML GF + + V A+
Sbjct: 192 INSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAED 251
Query: 208 ----VQVILLSATMP 240
Q +L SAT+P
Sbjct: 252 REDKPQTLLFSATLP 266
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 13 REDIRQLESGVHVVVGTPGRVYDMI--TXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
+ + +L+ GV++++ TPGR+ D + T L+ N ++ V+DEAD +L GF++++ +
Sbjct: 685 KAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKN-LQCLVIDEADRILEIGFEEEMRQI 743
Query: 187 FKMLSADVQVILLSATMPDDV 249
++L + Q +L SAT +V
Sbjct: 744 IRILPSKRQTVLFSATQTKNV 764
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
HVV+ TPGR+ D I + L+ I+ VLDEAD +L F D + +F + Q +L
Sbjct: 127 HVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLL 186
Query: 223 LSATMPDDVLE 255
SAT+ D + E
Sbjct: 187 FSATLTDTMGE 197
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMIT---XRALHANTIKLFVLDEADEMLSRGFKDQI- 177
+ E I +L+ G ++V TPGR+ DM+T R + VLDEAD M GF+ QI
Sbjct: 184 ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQIT 243
Query: 178 -------XXVFKMLSADVQVILLSATMP 240
+ + D Q ++ SAT P
Sbjct: 244 KIRYPKVMRIIDCIRPDRQTVMFSATFP 271
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +1
Query: 43 VHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKML 198
V +V GTPG++ D IT + + +K F+LDEAD +L++G D I ++ +
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRAL 102
VRED +LE GVHVVVGTPGRV+DMI L
Sbjct: 14 VREDRMKLEEGVHVVVGTPGRVFDMINRGVL 44
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFK 192
E + L+ G +VV TPGR+ D + +A + + + V DEAD M GF FK
Sbjct: 632 EQSKALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFALLFSATFK 690
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 396 LSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITT 575
+S +IF + + L ++ DF V+ +HGDMD G F +L+ T
Sbjct: 727 ISAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVAT 786
Query: 576 DLLG 587
D+ G
Sbjct: 787 DVAG 790
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 100 LHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQ 213
L +IK+ VLDEADEML++GFK+QI V++ L Q
Sbjct: 31 LDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 118 KLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLSATMPDDVLEY 258
+ VLDEAD M+ GF++ + +F + Q +L SATMP + +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNF 64
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 118 KLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLSATMPDDVLEY 258
+ VLDEAD M+ GF++ + +F + Q +L SATMP + +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNF 64
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 VREDIRQLESGV-HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSR 159
+++D + L++ H+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 156 IKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +3
Query: 279 PVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLT 455
P+ + V E +LTL G++Q+Y+ ++ E K L DL D L Q +IF + ++ L+
Sbjct: 294 PMEVYVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDLLEFNQVIIFVKSVQRCTALS 352
Query: 456 ESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ ++F +H M F R+L+ T+L G
Sbjct: 353 HLLLKQNFPAICIHRGMKQEERLARYQQFKNFEKRMLVATNLFG 396
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 VREDIRQLESGV-HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSR 159
+++D + L++ H+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 156 IKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +1
Query: 115 IKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLSATMPDDV 249
+++ VLDEAD ML GF I V L A Q +L SAT DD+
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 48
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYD-MITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
++VV TPGR+ M ++++ VLDEAD +L GF + + + L ++ Q +L
Sbjct: 173 NIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLL 232
Query: 223 LSATMPDDV 249
SAT V
Sbjct: 233 YSATQTRSV 241
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKM---LS 201
L G VVV TPGR+ D+ I V+DE D ML G ++Q+ + + S
Sbjct: 214 LREGADVVVATPGRLLDLY--------KITYLVMDEPDRMLGMGMEEQLRKIVGLATGTS 265
Query: 202 ADVQVILLSATMPDDV 249
Q +L SAT+P+ +
Sbjct: 266 RARQTLLWSATLPESL 281
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/83 (20%), Positives = 39/83 (46%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R + +P+ I V L ++Q + + + K + L + T ++F ++
Sbjct: 284 LARSAVLNPITIQVGPGGLIAPSVQQNVVFLYHYQ-KPQKLLETLRTTPYPPVIVFTSSI 342
Query: 435 RKVDWLTESMHLRDFTVSAMHGD 503
+ VD++TE + F S +H +
Sbjct: 343 QNVDYVTELLKQEQFHASGLHSE 365
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 46 HVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQ 174
H+++ TPGR+ D + + T+K V+DEAD +L+ F+ +
Sbjct: 84 HIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKE 127
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXR--ALHANTIKLFVLDEADEMLSR---GFKDQIXXVFKMLS-ADV 210
++V TP R+ ++T + + ++ +LDEAD++ GF++QI +++ + D+
Sbjct: 259 ILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDI 318
Query: 211 QVILLSATMPDDVLEY 258
L SAT+ + + E+
Sbjct: 319 HRGLFSATLSNGIEEW 334
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVY 78
+ EDIR+L+ G H+V GTPGRV+
Sbjct: 43 IGEDIRKLDYGQHIVSGTPGRVF 65
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 315 LEGIKQFYIAIELEEWKLETLCDLY--DTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVS 488
L ++ +I + E K E + +L D+ S Q ++FCN+ DWL + + ++
Sbjct: 624 LPHVRHKFIKLNQHE-KAERIVELLKKDSKSPGQTIVFCNSASSCDWLARHLEQHNLSLI 682
Query: 489 AMHGDM 506
+HG++
Sbjct: 683 RLHGNI 688
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFK 168
LES V ++V TPG + L + + V+DEAD M FK
Sbjct: 502 LESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFK 547
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMIT 90
I +L+ G ++V TPGR+ DM+T
Sbjct: 1 IAELKRGAEIIVCTPGRMIDMLT 23
>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
Length = 472
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 37 SGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQV 216
S V ++ G PG V I + +NT + + D D M S D + ++ D
Sbjct: 376 SSVDIIDGNPGHVMSTIATDDVTSNTDDIMIEDNPDNMTSNISTDDVTSNDDIMIEDNPD 435
Query: 217 ILLSATMPDDV 249
+ S DDV
Sbjct: 436 NMTSNIATDDV 446
>SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 8 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 37
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 87 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 116
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +1
Query: 61 TPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLSATMP 240
TP + + ++ + A + L V+DEA + L Q+ + + +V+ LSAT
Sbjct: 213 TPQVLQNDLSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPG 272
Query: 241 DDVLEYLDAL*EILYAYLYRR 303
DD+ L +L +++ R
Sbjct: 273 DDIKAVQQVLTNLLISHVELR 293
>SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)
Length = 1559
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 87 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 116
>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 87 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 116
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 287 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 316
>SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 8 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 37
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 DTLSIAQAVIFCNTRRKVDWLTESMHLRDF 479
+T +A+ + FC T RK+DW + + DF
Sbjct: 51 ETSVLARGLTFCPTPRKIDWSQVNADIYDF 80
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 306 ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQ 410
E L + Q AI+L EW+ C LY ++ + Q
Sbjct: 3881 ERPLSEVLQLTGAIQLTEWEFSEACHLYTSVRVGQ 3915
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 52 VVGTPGRVYDMITXRALHANTIKLFVLDEAD 144
VV TPGR ++ L ++++ V DEAD
Sbjct: 391 VVATPGRFLHVVMEMELKLSSVEYVVFDEAD 421
>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
Length = 613
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 103 EAHXXLSYHIHDLECPPPHEHHSPVGEYLH 14
E H L++H H +CP E+H+ + + H
Sbjct: 89 EYHAMLTFHTHFTQCPDFSEYHAMLPFHTH 118
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 43 VHVVVGTPGRVYDMITXRALHANTIKLF---VLDEADEMLSRGFKDQIXXVFKML 198
V VVV V +T + H + I+L V+DEAD M+ +G +++ + +++
Sbjct: 313 VAVVVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 382 TCMIHCLLHKL*FSATPVARWIG 450
T + C+L + FSA P +RW+G
Sbjct: 281 TARVSCMLQREMFSAFPCSRWLG 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,565,857
Number of Sequences: 59808
Number of extensions: 494438
Number of successful extensions: 1136
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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