Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0211
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   1e-09
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.89 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
 Frame = +1

Query: 28  QLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF----KM 195
           +L +G H++V TPGR+ D +    +  ++++  VLDEAD ML  GF   I  +      +
Sbjct: 319 KLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMV 378

Query: 196 LSADVQVILLSATMPDDV 249
              + Q ++ SAT PD+V
Sbjct: 379 PLGERQTLMFSATFPDEV 396


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 277 ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLH 408
           I Y ++  R  LPW   NN+    N  N   +  ++C +    H
Sbjct: 85  IFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKH 128


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 168 LETSGQHFISFIKNKKFDGVGMKRTXSYHIIY-TTWSA 58
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 103 EAHXXLSYHIHDLECPPPHEHHSP 32
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 472 RRCIDSVSQSTLRRVLQKITACAID 398
           R+C+D+          QK + C ID
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVID 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,113
Number of Sequences: 438
Number of extensions: 4661
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)