Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0211
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 153 8e-38
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 153 1e-37
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 152 2e-37
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 144 5e-35
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 128 3e-30
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 75 3e-14
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 75 3e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 71 7e-13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 70 1e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 70 2e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 69 2e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 69 3e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 67 9e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 67 9e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 67 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 65 4e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 64 6e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 64 6e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 64 6e-11
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 64 8e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 62 3e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 3e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 62 3e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 62 3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 62 4e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 61 6e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 61 8e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 61 8e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 8e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 61 8e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 58 4e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 58 4e-09
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 58 7e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 57 1e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 57 1e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 56 2e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 55 5e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 9e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 54 9e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 52 4e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 52 5e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 5e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 5e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 1e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 2e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 2e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 44 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 43 2e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 5e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 42 5e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.005
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 37 0.011
At2g28600.1 68415.m03476 expressed protein 37 0.011
At4g37020.1 68417.m05244 expressed protein 30 1.7
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 2.9
At2g43110.1 68415.m05352 expressed protein 29 2.9
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 28 5.0
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 28 5.0
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 28 5.0
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 28 6.7
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 153 bits (372), Expect = 8e-38
Identities = 75/110 (68%), Positives = 87/110 (79%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R FM PVRILV+++ELTLEGIKQFY+ +E EEWKLETLCDLY+TL+I Q+VIF NTR
Sbjct: 229 ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 288
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
RKVDWLT+ M RD TVSA HGDMD + F GSSRVLITTDLL
Sbjct: 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338
Score = 117 bits (281), Expect = 8e-27
Identities = 62/129 (48%), Positives = 83/129 (64%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
VRED R L++GVHVVVGTPGRV+DM+ ++L A+ IK+FVLDEADEMLSRGFKDQI +F
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIF 206
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
++L +QV + SATMP + LE L +R L + + F +N + W
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF--YVNVEKEEW 264
Query: 370 KLCVTCMIH 396
KL C ++
Sbjct: 265 KLETLCDLY 273
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 153 bits (370), Expect = 1e-37
Identities = 74/110 (67%), Positives = 87/110 (79%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R FM PVRILV+++ELTLEGIKQFY+ ++ EEWKLETLCDLY+TL+I Q+VIF NTR
Sbjct: 231 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTR 290
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
RKVDWLT+ M RD TVSA HGDMD + F GSSRVLITTDLL
Sbjct: 291 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340
Score = 118 bits (283), Expect = 5e-27
Identities = 63/129 (48%), Positives = 83/129 (64%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
VRED R L+SGVHVVVGTPGRV+D++ ++L A+ IK+FVLDEADEMLSRGFKDQI +F
Sbjct: 149 VREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIF 208
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
++L + VQV + SATMP + LE L +R L + + F +N W
Sbjct: 209 QLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF--YVNVDKEEW 266
Query: 370 KLCVTCMIH 396
KL C ++
Sbjct: 267 KLETLCDLY 275
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 152 bits (369), Expect = 2e-37
Identities = 74/110 (67%), Positives = 87/110 (79%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R FM PVRILV+++ELTLEGIKQFY+ +E E+WKLETLCDLY+TL+I Q+VIF NTR
Sbjct: 229 ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTR 288
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
RKVDWLT+ M RD TVSA HGDMD + F GSSRVLITTDLL
Sbjct: 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338
Score = 114 bits (275), Expect = 4e-26
Identities = 61/129 (47%), Positives = 82/129 (63%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
VRED R L++GVHVVVGTPGRV+DM+ ++L + IK+FVLDEADEMLSRGFKDQI +F
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIF 206
Query: 190 KMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSW 369
++L +QV + SATMP + LE L +R L + + F +N + W
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF--YVNVEKEDW 264
Query: 370 KLCVTCMIH 396
KL C ++
Sbjct: 265 KLETLCDLY 273
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 144 bits (349), Expect = 5e-35
Identities = 67/105 (63%), Positives = 83/105 (79%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
FM +PV+ILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I QAVIFCNT+RKVD
Sbjct: 229 FMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVD 288
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+L+E M +FTVS+MHGDM F G SRVLITTD+
Sbjct: 289 YLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDV 333
Score = 113 bits (272), Expect = 1e-25
Identities = 60/131 (45%), Positives = 80/131 (61%)
Frame = +1
Query: 4 HEVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXX 183
+ V EDIR+LE GVHVV GTPGRV DMI R+L IKL +LDE+DEMLSRGFKDQI
Sbjct: 141 NSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYD 200
Query: 184 VFKMLSADVQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNG 363
V++ L D+QV L+SAT+P ++LE L +R L + + F + + +
Sbjct: 201 VYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAV--EKE 258
Query: 364 SWKLCVTCMIH 396
WK C ++
Sbjct: 259 EWKFDTLCDLY 269
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1
Query: 583 WARGIDVQQVFLRSFKL*SGHPNREKLYSPGFGPS 687
WARGIDVQQV S + PN +LY G S
Sbjct: 334 WARGIDVQQV---SLVINYDLPNNRELYIHRIGRS 365
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 128 bits (309), Expect = 3e-30
Identities = 61/105 (58%), Positives = 75/105 (71%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
FM DPVRILV+ +ELTLEGIKQ+Y+ ++ EEWK +TLCDLY L+I QA+IFCNTR+KVD
Sbjct: 216 FMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVD 275
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
WLTE M +F VS+MHGD F SRVLI +D+
Sbjct: 276 WLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDV 320
Score = 105 bits (253), Expect = 2e-23
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ EDI++LE GVH V GTPGRVYDMI +L +KL VLDE+DEMLS+G KDQI V+
Sbjct: 130 IGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVY 189
Query: 190 KMLSADVQVILLSATMPDDVLE 255
+ L D+QV L+SAT+P ++LE
Sbjct: 190 RALPHDIQVCLISATLPQEILE 211
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/116 (34%), Positives = 67/116 (57%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSAD 207
+++ GV +++GTPGRV D+++ + + I FVLDE D ML RGF+DQ+ +F+ LS
Sbjct: 232 RIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-Q 290
Query: 208 VQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKL 375
QV+L SAT+ +V + +L + + + P K +N + ++ K KL
Sbjct: 291 PQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKL 346
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/116 (34%), Positives = 67/116 (57%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSAD 207
+++ GV +++GTPGRV D+++ + + I FVLDE D ML RGF+DQ+ +F+ LS
Sbjct: 95 RIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-Q 153
Query: 208 VQVILLSATMPDDVLEYLDAL*EILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKL 375
QV+L SAT+ +V + +L + + + P K +N + ++ K KL
Sbjct: 154 PQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKL 209
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ + +RQL+ GV V VGTPGRV D++ AL+ + ++ VLDEAD+ML GF + + +
Sbjct: 216 IGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIIL 275
Query: 190 KMLSADVQVILLSATMP 240
+ L Q ++ SATMP
Sbjct: 276 EKLPEKRQSMMFSATMP 292
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 408 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+ ++F T+R D L+ ++ R F A+HGD+ + + F G +L+ TD+
Sbjct: 351 KCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/77 (40%), Positives = 50/77 (64%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ + +R+L G+ V VGTPGR+ D++ AL+ + ++ VLDEAD+ML GF + + +
Sbjct: 228 IGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIIL 287
Query: 190 KMLSADVQVILLSATMP 240
+ L A Q ++ SATMP
Sbjct: 288 QKLPAKRQSMMFSATMP 304
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 408 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+ ++F T+R D L + + + A+HGD+ + + F G+ +L+ TD+
Sbjct: 363 KCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
++R + ++ GVH+VV TPGR+ DM+ + + + + LDEAD ++ GF+D I V
Sbjct: 267 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 326
Query: 187 FKMLSADVQVILLSATMPDDV 249
F + Q +L SATMP +
Sbjct: 327 FDHFKSQRQTLLFSATMPTKI 347
Score = 34.3 bits (75), Expect = 0.077
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 414 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+IFC + VD + E + L+ A+HG D + + SF G VL+ TD+
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDV 456
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
++R + ++ GVH+VV TPGR+ D++ + + + +L LDEAD ++ GF+D I V
Sbjct: 218 DMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHV 277
Query: 187 FKMLSADVQVILLSATMP 240
F + Q +L SATMP
Sbjct: 278 FDHFKSQRQTLLFSATMP 295
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 414 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+IFC + VD + E + L+ A+HG D + F G VL+ TD+
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDV 407
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADV 210
L GV VVVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284
Query: 211 QVILLSATMP 240
Q +L SATMP
Sbjct: 285 QSMLFSATMP 294
Score = 35.5 bits (78), Expect = 0.033
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Frame = +3
Query: 255 VSRCFMRDPVRI-LV-QKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIA-QAVIFC 425
++R ++ +P+ I LV ++E EGIK + IA K L DL + + ++F
Sbjct: 300 LARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTS-KRTILSDLITVYAKGGKTIVFT 358
Query: 426 NTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
T+R D ++ ++ A+HGD+ + + +F G VL+ TD+
Sbjct: 359 QTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDV 409
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + +
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 341
Query: 202 ADVQVILLSATMPDDV 249
D Q +L SAT P +V
Sbjct: 342 PDRQTLLWSATWPREV 357
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
++R F+RDP + ++ +L + I Q + E L L + ++ +IF T
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVET 419
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+R D +T + + + A+HGD F G S ++ TD+
Sbjct: 420 KRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + +
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 341
Query: 202 ADVQVILLSATMPDDV 249
D Q +L SAT P +V
Sbjct: 342 PDRQTLLWSATWPREV 357
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
++R F+RDP + ++ +L + I Q + E L L + ++ +IF T
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVET 419
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+R D +T + + + A+HGD F G S ++ TD+
Sbjct: 420 KRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKM 195
E ++L++G +VV TPGR+ DM+ +AL VLDEAD M GF+ Q+ +
Sbjct: 343 EQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQ 402
Query: 196 LSADVQVILLSATMP 240
+ D Q +L SATMP
Sbjct: 403 IRPDRQTLLFSATMP 417
Score = 48.8 bits (111), Expect = 3e-06
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNT 431
++R + DP+R+ V + + E I Q I + KL L + L + ++F +
Sbjct: 423 LAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASK 482
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+ VD + + L F V+A+HGD D S + F G VLI TD+
Sbjct: 483 KATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDV 532
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
I + SGV +V+GTPGR+ D+I L + + VLDEAD ML GF++ + + +
Sbjct: 235 ISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTN 294
Query: 202 ADVQVILLSATMPDDV 249
Q+++ SAT P DV
Sbjct: 295 KVRQMVMFSATWPLDV 310
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K +
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP 333
Query: 202 ADVQVILLSATMPDDV 249
Q ++ +AT P V
Sbjct: 334 TKRQTLMYTATWPKGV 349
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +IFC+T+R D LT ++ R F +A+HGD F G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDV 461
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K +
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP 333
Query: 202 ADVQVILLSATMPDDV 249
Q ++ +AT P V
Sbjct: 334 TKRQTLMYTATWPKGV 349
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +IFC+T+R D LT ++ R F +A+HGD F G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDV 461
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K +
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP 333
Query: 202 ADVQVILLSATMPDDV 249
Q ++ +AT P V
Sbjct: 334 TKRQTLMYTATWPKGV 349
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +IFC+T+R D LT ++ R F +A+HGD F G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDV 461
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 64.1 bits (149), Expect = 8e-11
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD ML GF QI + +
Sbjct: 216 VRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR 275
Query: 202 ADVQVILLSATMPDDV 249
D Q + SAT P +V
Sbjct: 276 PDRQTLYWSATWPKEV 291
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY-DTLSIAQAVIFCNT 431
+S+ F+ +P ++++ +L + + + E K L L D + ++ ++F +T
Sbjct: 294 LSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDT 353
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ D +T + + + ++HGD F G S ++ TD+
Sbjct: 354 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/76 (35%), Positives = 46/76 (60%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
++++E GV +VV TPGR+ D++ + + + + VLDEAD ML GF+ QI + +
Sbjct: 345 LKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP 404
Query: 202 ADVQVILLSATMPDDV 249
Q ++ +AT P +V
Sbjct: 405 TKRQTLMYTATWPKEV 420
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +IFC+T+R D L ++ R F +A+HGD F G + VL+ TD+
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDV 532
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/76 (36%), Positives = 45/76 (59%)
Frame = +1
Query: 22 IRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+++LE G +VV TPGR+ D++ + + + L VLDEAD ML GF+ QI + +
Sbjct: 551 LKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIP 610
Query: 202 ADVQVILLSATMPDDV 249
Q ++ +AT P +V
Sbjct: 611 PRRQTLMYTATWPKEV 626
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +IFC+T+R D L S+ R F +HGD F G S VLI TD+
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDV 738
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+++DI +L VH++VGTPGR+ D+ + V+DEAD++LS+ F+ + +
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLI 298
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
L Q+++ SAT P V ++ D
Sbjct: 299 SFLPESRQILMFSATFPVTVKDFKD 323
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 325 FLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVE 382
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + + ++ +H M F G+ R L+ TDL
Sbjct: 383 LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 427
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+++DI +L VH++VGTPGR+ D+ + V+DEAD++LS+ F+ + +
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLI 298
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
L Q+++ SAT P V ++ D
Sbjct: 299 SFLPESRQILMFSATFPVTVKDFKD 323
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 325 FLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVE 382
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + + ++ +H M F G+ R L+ TDL
Sbjct: 383 LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 427
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+R+DI +L VH++VGTPGR+ D+ + V+DEAD++LS F+ I +
Sbjct: 262 LRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELI 321
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
+ L Q+++ SAT P V + D
Sbjct: 322 QFLPESRQILMFSATFPVTVKSFKD 346
Score = 47.6 bits (108), Expect = 8e-06
Identities = 31/105 (29%), Positives = 54/105 (51%)
Frame = +3
Query: 267 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 446
+++ P I+ ++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 348 YLKKPY-IINLMDQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVE 405
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
L + + ++ +H M F G+ R L+ TDL
Sbjct: 406 LLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDL 450
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKML--S 201
+L+ GV +VVGTPGR+ D I + L + ++ VLDEADEML GF + + + + S
Sbjct: 220 KLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDS 279
Query: 202 ADVQVILLSATMP 240
VQ +L SAT+P
Sbjct: 280 TKVQTLLFSATLP 292
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+R+DI +L VH++VGTPGR+ D+ + V+DEAD++LS F+ + +
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI 291
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
+ L + Q ++ SAT P V + D
Sbjct: 292 QFLPQNRQFLMFSATFPVTVKAFKD 316
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Frame = +3
Query: 303 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 482
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 387
Query: 483 VSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+H M F G+ R L+ TDL
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDL 420
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+R+DI +L VH++VGTPGR+ D+ + V+DEAD++LS F+ + +
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI 291
Query: 190 KMLSADVQVILLSATMPDDVLEYLD 264
+ L + Q ++ SAT P V + D
Sbjct: 292 QFLPQNRQFLMFSATFPVTVKAFKD 316
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Frame = +3
Query: 303 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 482
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 387
Query: 483 VSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
+H M F G+ R L+ TDL
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDL 420
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
V + IR+LE GV ++V TPGR+ D++ + ++ LDEAD ML GF+ QI +
Sbjct: 264 VNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIV 323
Query: 190 KMLSADV----QVILLSATMPDDV 249
+ + Q +L SAT P ++
Sbjct: 324 QQMDMPPPGVRQTMLFSATFPREI 347
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
A ++F T++ D L + + F + +HGD + + SF G + +L+ TD+
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDV 464
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ + +R+LE GV ++V TPGR+ D++ + I+ LDEAD ML GF+ QI +
Sbjct: 277 INQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 336
Query: 190 KMLSADV----QVILLSATMPDDV 249
+ + Q +L SAT P ++
Sbjct: 337 EQMDMPPRGVRQTLLFSATFPREI 360
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 405 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
A ++F T+R D L + + F +++HGD + + +F G + +L+ TD+
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDV 477
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ + +R+LE G ++V TPGR+ D++ + I+ LDEAD ML GF+ QI +
Sbjct: 269 IHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 190 KMLSADV----QVILLSATMPDDV 249
+ + Q +L SAT P +
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQI 352
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 414 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++F T+R D L + + +F +++HGD + + SF G + +L+ TD+
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDV 467
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+ + +R+LE G ++V TPGR+ D++ + I+ LDEAD ML GF+ QI +
Sbjct: 269 IHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 190 KMLSADV----QVILLSATMPDDV 249
+ + Q +L SAT P +
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQI 352
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 414 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++F T+R D L + + +F +++HGD + + SF G + +L+ TD+
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDV 467
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMI---TXRALHANTIKLFVLDEADEMLSRGFKDQIX 180
V + I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 509 VAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQIT 568
Query: 181 XVFKMLSADVQVILLSATMPDDV 249
+ + + D Q +L SAT P V
Sbjct: 569 RIVQNIRPDRQTVLFSATFPRQV 591
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEML-SRGFKDQIXXVFKMLSADVQVIL 222
H+VVGTPGRV + + L ++ F+LDE D+ML S + + +FKM D QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 223 LSATMPDDV 249
SAT+ ++
Sbjct: 228 FSATLSKEI 236
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VIF +
Sbjct: 239 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDALDFNQVVIFVKS 297
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ L + + +F +H M SF G R+L+ TDL+G
Sbjct: 298 VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 349
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEML-SRGFKDQIXXVFKMLSADVQVIL 222
H+VVGTPGRV + + L ++ F+LDE D+ML S + + +FKM D QV++
Sbjct: 85 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 144
Query: 223 LSATMPDDV 249
SAT+ ++
Sbjct: 145 FSATLSKEI 153
Score = 54.8 bits (126), Expect = 5e-08
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VIF +
Sbjct: 156 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKS 214
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ L + + +F +H M SF G R+L+ TDL+G
Sbjct: 215 VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 266
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEML-SRGFKDQIXXVFKMLSADVQVIL 222
H+VVGTPGRV + + L ++ F+LDE D+ML S + + +FKM D QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 223 LSATMPDDV 249
SAT+ ++
Sbjct: 228 FSATLSKEI 236
Score = 54.8 bits (126), Expect = 5e-08
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 431
V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VIF +
Sbjct: 239 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKS 297
Query: 432 RRKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ L + + +F +H M SF G R+L+ TDL+G
Sbjct: 298 VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 349
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMI---TXRALHANTIKLFVLDEADEMLSRGFKDQIX 180
V + I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 642 VAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT 701
Query: 181 XVFKMLSADVQVILLSATMPDDV 249
+ + + + Q +L SAT P V
Sbjct: 702 RIIQNIRPERQTVLFSATFPRQV 724
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITX-RALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
+ + +L G V++ TPGR+ +++ + T++ V DEAD + GF +Q+ +
Sbjct: 138 MEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQI 197
Query: 187 FKMLSADVQVILLSATMPDDVLEYLDA 267
LS + Q +L SAT+P + E+ A
Sbjct: 198 LTQLSENRQTLLFSATLPSALAEFAKA 224
Score = 35.1 bits (77), Expect = 0.044
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +3
Query: 270 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNTRRKVD 446
+R+P + + E +K ++ + EE L + + +S Q +IF +T+ V+
Sbjct: 226 LREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVE 285
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ L + S +GDMD + K F + +LI TD+
Sbjct: 286 FVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDI 330
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 54.8 bits (126), Expect = 5e-08
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +1
Query: 7 EVREDIRQLES-GVHVVVGTPGRVYDMITX-RALHANTIKLFVLDEADEMLSRGFKDQIX 180
EV+ D++ +E G +V++GTPGR+ D++ L +++ +LDEAD +L GF+ Q+
Sbjct: 130 EVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVN 189
Query: 181 XVFKMLSADVQVILLSATMPDDVLEYLDA 267
+ L + L SAT + V E A
Sbjct: 190 YIISRLPKQRRTGLFSATQTEGVEELAKA 218
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 312 TLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW----LTESMHLRDF 479
T G+ Y+ E ++ K L DL S + ++F T VD+ L++ L+
Sbjct: 245 TPSGLHLEYMECEADK-KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSI 303
Query: 480 TVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDL 581
++ +HGDM + + SF SS L+ TD+
Sbjct: 304 SLIPIHGDMKQNARDKALASFTKASSGALLCTDV 337
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 7 EVREDIRQLES-GVHVVVGTPGRVYDMITXRA-LHANTIKLFVLDEADEMLSRGFKDQIX 180
EV D+ LE G ++++GTPGR+ DM+ L +++ +LDEAD +L GF+ Q+
Sbjct: 130 EVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVN 189
Query: 181 XVFKMLSADVQVILLSATMPDDVLEYLDA 267
+ L + L SAT V + A
Sbjct: 190 YIISRLPKQRRTGLFSATQTQAVADLAKA 218
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 7 EVREDIRQLES-GVHVVVGTPGRVYDMITXRA-LHANTIKLFVLDEADEMLSRGFKDQIX 180
EV D+ LE G ++++GTPGR+ DM+ L +++ +LDEAD +L GF+ Q+
Sbjct: 123 EVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVN 182
Query: 181 XVFKMLSADVQVILLSATMPDDVLEYLDA 267
+ L + L SAT V + A
Sbjct: 183 YIISRLPKQRRTGLFSATQTQAVADLAKA 211
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = +1
Query: 46 HVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSR-GFKDQIXXVFK---MLSADVQ 213
HVV+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++ + Q
Sbjct: 216 HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQ 275
Query: 214 VILLSATMPDDVLEYL 261
V+L SAT + V +++
Sbjct: 276 VLLFSATFNETVKDFV 291
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Frame = +3
Query: 270 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNTRRKVD 446
++DP ++ V++E+L L+ +KQ+ + E+ K+E + D + + I Q +IF T+
Sbjct: 295 VKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQ 354
Query: 447 WLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
+ +++ + V+++HG++ F ++VLI TD++
Sbjct: 355 KVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVI 400
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 13 REDIRQLESG-VHVVVGTPGRVYDMITXRA---LHANTIKLFVLDEADEMLSRGFKDQIX 180
R D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L GFK +
Sbjct: 494 RLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVE 553
Query: 181 XVFKMLSADVQVILLSATMPDDV 249
+ L Q +L SAT+P +V
Sbjct: 554 KIIDCLPRQRQSLLFSATIPKEV 576
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXR---ALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
E R + ++V TPGR+ D I A +K+ VLDEAD +L GF+ I +
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 187 FKMLSADVQVILLSATMPDDV 249
+ + Q L SAT+P++V
Sbjct: 234 ISAVPKERQTFLFSATVPEEV 254
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
VRE L S +VV TPGR+ D + ++ + + + +LDEAD +L GF +I +
Sbjct: 278 VREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITEL 337
Query: 187 FKMLSADVQVILLSATMPDDVLE 255
++ Q +L SATM ++V E
Sbjct: 338 VRLCPKRRQTMLFSATMTEEVKE 360
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 13 REDIRQLESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
R + +++ SG ++V+ TPGR+ D + +A +K V+DEAD +L F++ + +
Sbjct: 202 RSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKIL 261
Query: 190 KMLSADVQVILLSATMPDDV 249
K+L Q L SAT V
Sbjct: 262 KILPKTRQTALFSATQTSKV 281
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMITXRA----LHANTIKLFVLDEADEMLSRGFKDQIXXVFKML 198
L S H+V+ TPGR+ ++ + + T K VLDEAD +L GF+D++ +F+ L
Sbjct: 173 LVSRPHIVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCL 231
Query: 199 SADVQVILLSATMPDDVLEYLD 264
Q +L SATM ++ L+
Sbjct: 232 PKSRQTLLFSATMTSNLQALLE 253
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 46 HVVVGTPGRVYD-MITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVIL 222
HV+V TPGR++D M + ++K VLDEAD +L+ F+ + + + + + + L
Sbjct: 141 HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFL 200
Query: 223 LSATMPDDV 249
SATM V
Sbjct: 201 FSATMTKKV 209
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANT---IKLFVLDEADEMLSRGFKDQIXXV 186
E R +S ++V TPGR+ D I + A +K+ VLDEAD +L GF+ +I +
Sbjct: 200 EQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI 259
Query: 187 FKMLSADVQVILLSATMPDDV 249
+ Q L SAT+ D+V
Sbjct: 260 IAAVPKQRQTFLFSATVSDEV 280
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +1
Query: 19 DIRQLESG-VHVVVGTPGRVYDMITXRA---LHANTIKLFVLDEADEMLSRGFKDQIXXV 186
D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L GF+ + +
Sbjct: 449 DQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKI 508
Query: 187 FKMLSADVQVILLSATMPDDV 249
L Q +L SAT+P +V
Sbjct: 509 IDCLPRQRQSLLFSATIPKEV 529
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 EDIRQLESGVHVVVGTPGRVYDMITXRALHANT---IKLFVLDEADEMLSRGFKDQIXXV 186
E R + ++V TPGR+ D I + A +K+ VLDEAD +L GF+ I +
Sbjct: 502 EQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERI 561
Query: 187 FKMLSADVQVILLSATMPDDV 249
+ Q L SAT+P++V
Sbjct: 562 IAAVPKQRQTFLFSATVPEEV 582
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 31 LESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSAD 207
L GV+++V TPGR+ D + +K V+DEAD +L + F++ + + +L
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Query: 208 VQVILLSAT 234
Q L SAT
Sbjct: 333 RQTSLFSAT 341
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXV 186
+ E ++ G +V+ TPGR+ D + R N VLDEAD M+ GF+ Q+ V
Sbjct: 429 IEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGV 487
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/111 (26%), Positives = 54/111 (48%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R ++R+PV + + T + I Q I ++ E K L L D L A++F NT+
Sbjct: 528 LARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESE-KFFRLQKLLDELGEKTAIVFVNTK 586
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLLG 587
+ D + +++ + V+ +HG + S F VL+ TD++G
Sbjct: 587 KNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVG 637
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 14/82 (17%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS--------- 201
+VVGTPGR+ ++ LH + + VLDE DE+LS F++ I + + +
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKG 305
Query: 202 -----ADVQVILLSATMPDDVL 252
A+ Q IL+SAT+P V+
Sbjct: 306 EVDERANRQTILVSATVPFSVI 327
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +3
Query: 336 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDNV 515
Y I + K++TL L + F N R++ + + R + MHGD+ +
Sbjct: 385 YYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKL 444
Query: 516 SVK*S*GSFVLGSSRVLITTDL 581
F G +VL+T +L
Sbjct: 445 GRSTVLKKFKNGEIKVLVTNEL 466
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Frame = +1
Query: 10 VREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQI---- 177
+R L + + +VVGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFL 288
Query: 178 ----XXVFKMLSADVQVILLSATMPDDVLEYLD 264
K Q +L++ATM V + +D
Sbjct: 289 APLNQRALKTNDQGFQTVLVTATMTMAVQKLVD 321
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 25 RQLESGVHVVVGTPGRVYDMITXRALHA---NTIKLFVLDEADEMLSRGFKDQIXXVFKM 195
R+L+ +VV TPGR++++++ H +++ FVLDEAD M+ RG ++ + +
Sbjct: 324 RRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDL 383
Query: 196 L 198
L
Sbjct: 384 L 384
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 19 DIRQLESGV-HVVVGTPGRVYDMITXRALH----ANTIKLFVLDEADEMLSRGFKDQIXX 183
D+R +G+ ++V TP + L + ++ + VLDEAD +LS G++D +
Sbjct: 164 DMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRS 223
Query: 184 VFKMLSADVQVILLSATMPDDV 249
V ++ Q +L+SAT DV
Sbjct: 224 VTSIIPRRCQCLLMSATTSSDV 245
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 28 QLESGVHVVVGTPGRVYDMI--TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS 201
+L G+ +++ TPGR+ D + T +H N ++ + DEAD +L G+ +I + K+L
Sbjct: 151 RLRKGISILIATPGRLLDHLKNTASFVHKN-LRWVIFDEADSILELGYGKEIEQIIKLLG 209
Query: 202 A 204
+
Sbjct: 210 S 210
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/110 (22%), Positives = 48/110 (43%)
Frame = +3
Query: 255 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 434
++R M D VR+++ ++ E +KQ + EE KL L + +IF ++
Sbjct: 331 LARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSK 390
Query: 435 RKVDWLTESMHLRDFTVSAMHGDMDNVSVK*S*GSFVLGSSRVLITTDLL 584
+ L + + + +H D+ + + F G VLI TD++
Sbjct: 391 ERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVI 440
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 VVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLS-ADVQVILL 225
V++ TP R+ I + + + ++ VLDE+D++ + QI V K S + L
Sbjct: 261 VLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLF 320
Query: 226 SATMPDDVLE 255
SAT+PD V E
Sbjct: 321 SATLPDSVEE 330
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 13 REDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRG-FKDQIXXVF 189
R + LE GV V++ TPGR ++ L + ++ +LDE D + F+ + +
Sbjct: 493 RTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLI 552
Query: 190 KMLSADVQVILLSATMPDDVLEYL 261
Q + ++AT+P ++ L
Sbjct: 553 NSSPVTAQYLFVTATLPLEIYNKL 576
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 43 VHVVVGTPGRVYD-MITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVI 219
++++V PGR+ M +++ +LDEAD +L FK Q+ + L Q +
Sbjct: 194 MNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTL 253
Query: 220 LLSATMPDDV 249
L SAT V
Sbjct: 254 LFSATQTKKV 263
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 16 EDIRQ-LESGVHVVVGTPGRVYDMI-TXRALHANTIKLFVLDEADEMLSRGFKDQIXXVF 189
+D+ Q LES V ++V TPGR+ D I + ++ V+DE D +L ++ + V
Sbjct: 156 DDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVL 215
Query: 190 KM 195
++
Sbjct: 216 QL 217
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/67 (20%), Positives = 37/67 (55%)
Frame = +1
Query: 52 VVGTPGRVYDMITXRALHANTIKLFVLDEADEMLSRGFKDQIXXVFKMLSADVQVILLSA 231
+V TP R+ +++T + + + + L V+DE + S G+ + + + + +S+ Q I+ +
Sbjct: 250 IVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNN 309
Query: 232 TMPDDVL 252
+ ++
Sbjct: 310 SFSASII 316
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +3
Query: 333 FYIAIELEEWKLETLCDLYDTLS---IAQAVIFCNTRRKVDWLTESMH-LRDFTVSAMHG 500
FY+A++ ++K+ET+ +L L V+ C++R ++D + S+ L +++A++
Sbjct: 23 FYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYS 82
Query: 501 DM 506
D+
Sbjct: 83 DL 84
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 160 LWTTFHQLHQEQKV*WCWHEAHXXLSYHIHDLECPPPHEHHSP 32
L T +H HQE W E+H DL+ PPP E+ P
Sbjct: 126 LTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 7 EVREDIRQLESGVHVVVGTPGRVYDMITXRALHANTIKLFVLD 135
+V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 190 KVEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 206 SADNILKTXWIWSLKPLDNISSASSRTKSLMVLA*SARXVIISYTRPG 63
SA + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 206 SADNILKTXWIWSLKPLDNISSASSRTKSLMVLA*SARXVIISYTRPG 63
SA + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 206 SADNILKTXWIWSLKPLDNISSASSRTKSLMVLA*SARXVIISYTRPG 63
SA + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 277 ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLHK 411
++ A + KS PW L FT+++ G + L V M+ L H+
Sbjct: 593 VVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHR 637
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,201
Number of Sequences: 28952
Number of extensions: 338477
Number of successful extensions: 948
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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