Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0210
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    27   9.4  
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    27   9.4  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    27   9.4  
03_06_0703 + 35632731-35633032,35633261-35633298,35634041-356341...    27   9.4  

>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 397 STTQMPPPALVHNIGSQ*LQQLPHPSNRNALLLQK 293
           S+ Q P   L+H      L Q PHP   N +LLQK
Sbjct: 389 SSKQTPTEQLLHY-----LPQFPHPQQHNEVLLQK 418


>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 413 VVTGDIYNANAATRLGT*YRVSVVTTAAPSFKPKRITASEI 291
           + TG +YN+  +T     Y +S+V TAA S  P  I A EI
Sbjct: 147 LTTGVLYNSGWSTATDGNYNISLVPTAA-SKLPPMINALEI 186


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 322 SNRNALLLQK*AGWWYLPVRTHKDIP 245
           S   ALL QK  G  YLPV  H D+P
Sbjct: 476 STITALLKQKYPGSTYLPVGEHGDVP 501


>03_06_0703 +
           35632731-35633032,35633261-35633298,35634041-35634132,
           35639941-35640087
          Length = 192

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -3

Query: 356 RVSVVTTAAPSFKPKRITASEIGRVVVPTRA 264
           RV+VVT AAP  KP    AS    VVVP  A
Sbjct: 31  RVAVVTAAAPERKP-AAAASSSNYVVVPLDA 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,869
Number of Sequences: 37544
Number of extensions: 326657
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)