Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0210
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4)                    28   5.5  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            27   9.6  
SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  27   9.6  
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              27   9.6  

>SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 432 LTALMLSGYWRHLQRK-CRH 376
           L++L+  GYWRH QRK  RH
Sbjct: 219 LSSLIPDGYWRHTQRKMLRH 238


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 357 ILCTKAGGGICVVDVSSNHLTSG 425
           ++C +AG G+CVV V+    T+G
Sbjct: 195 VMCKEAGCGVCVVAVTKKDPTTG 217


>SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 288

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 40  KEQKINLSLKC*LLESNLGYIYINEVCNLIRLF-FNYITNEVVINHYFNVTD 192
           K   +N+ +KC      L +  +  +  L + F FN+IT + V  H+FN+T+
Sbjct: 196 KVDSLNIEMKC-----TLNFFQM-PLSKLPKAFGFNHITQKGVFPHFFNITE 241


>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 584 VPFFLAMEKAYMWRYNIIMYSRNCTLY 504
           VPF L +    MW + +  YS   TLY
Sbjct: 289 VPFVLLLLSRIMWDHRLASYSEGLTLY 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,091
Number of Sequences: 59808
Number of extensions: 358509
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)