Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0210
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    29   2.8  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    29   2.8  
Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 356 RVSVVTTAAPSFKPKRITASEIGRVV-VPTRADSQRYTTSKG 234
           RVS +  A   FK +R TA+ +  ++ VP+ ADS ++ TS G
Sbjct: 289 RVSFIIKAKSQFK-RRSTANNVEIIIPVPSDADSPKFKTSIG 329


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 356 RVSVVTTAAPSFKPKRITASEIGRVV-VPTRADSQRYTTSKG 234
           RVS +  A   FK +R TA+ +  ++ VP+ ADS ++ TS G
Sbjct: 289 RVSFIIKAKSQFK-RRSTANNVEIIIPVPSDADSPKFKTSIG 329


>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 593 KGLVPFFLAMEKAYMWRYNIIMYSRNCTL 507
           +GL PFF A+  + M R+  I  S+ CTL
Sbjct: 257 EGLYPFFSALHASAMCRFCSIYKSQKCTL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,198
Number of Sequences: 27780
Number of extensions: 273932
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)