Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0210
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 586 WSHSS*PWKRPTCGGIILLCIPEIVLYI 503
           WSH    W    CG   +LCIP  ++YI
Sbjct: 527 WSHVL-GW---LCGLSSMLCIPGYMIYI 550



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 626 YPAN*FRTGMGKGLVPFFLAMEKA 555
           +P   ++ G G  +VP+F+A+  A
Sbjct: 45  FPYLCYKNGGGAFMVPYFIALALA 68


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 586 WSHSS*PWKRPTCGGIILLCIPEIVLYI 503
           WSH    W    CG   +LCIP  ++YI
Sbjct: 580 WSHVL-GW---LCGLSSMLCIPGYMIYI 603



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 626 YPAN*FRTGMGKGLVPFFLAMEKA 555
           +P   ++ G G  +VP+F+A+  A
Sbjct: 98  FPYLCYKNGGGAFMVPYFIALALA 121


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 GICVVDVSSNHLT 419
           G+C V+VSS ++T
Sbjct: 125 GVCTVEVSSENMT 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 GICVVDVSSNHLT 419
           G+C V+VSS ++T
Sbjct: 125 GVCTVEVSSENMT 137


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 NYITNEVVINHYF 180
           NY T +V +NH++
Sbjct: 220 NYFTEDVGLNHFY 232


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 NYITNEVVINHYF 180
           NY T +V +NH++
Sbjct: 220 NYFTEDVGLNHFY 232


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 276 TYPCGLTKIYHQ 241
           T PCG+T  +H+
Sbjct: 336 TRPCGITLTFHE 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,643
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)