Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0210
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    28   5.9  
At1g80360.1 68414.m09407 aminotransferase class I and II family ...    27   7.8  

>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 209 KAEPT*PGNLYWWYIFVSPHG 271
           K EPT P  L WWY  + P G
Sbjct: 140 KMEPTKPLQLSWWYPRIEPTG 160


>At1g80360.1 68414.m09407 aminotransferase class I and II family
           protein low similarity to GI:14278621 Aromatic
           Aminotransferase from Pyrococcus horikoshii
          Length = 394

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 424 PDVKWLLETSTTQMPPPALVH--NIGSQ*LQQLPHPSNRNALLLQK*AGWWYLPVRTHK 254
           PD  WL  T +   P P +V   N G+     +P P  +    + K AG W +   T++
Sbjct: 150 PDADWLERTLSESKPTPKVVTVVNPGNPSGTYVPEPLLKRIAQICKDAGCWLIVDNTYE 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,829
Number of Sequences: 28952
Number of extensions: 257794
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)