Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0209
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   6.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.0  

>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 515 PVIIEIEKNLN*FHYILKLKSIESLKVLNL 426
           PV+ E ++NLN F  +   K+I+ L + NL
Sbjct: 5   PVLAEDQRNLNEFSVLHSRKAIQELDIKNL 34


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 209  LWFQLKYS-FPGNHFYLGT*TLCQMLFDKF*VKYLHFIIF 93
            L F L +S F G   YLG+ TL  +LF    V   H I F
Sbjct: 1472 LSFSLLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYF 1511


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 377 DCIYTFHIQLHYNLHSNNSLIEYIINKK 294
           D  Y  HI+LHY      SL   I +KK
Sbjct: 302 DAFYEAHIELHYQFLKEASLNTLIKDKK 329


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 179 GNHFYLGT*TLCQMLFDKF*VK-YLHFIIFCCLAYR 75
           G+  YL   TL + L+D   V  +   IIFCC+A R
Sbjct: 466 GSDPYLAPETLVRKLYDPRAVDIWSSAIIFCCMALR 501


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 215  TNLWFQLKYS-FPGNHFYLGT*TLCQMLFDKF*VKYLHFIIF 93
            T + F + YS + G+  YLG+  +  +LF    V   H++ F
Sbjct: 1404 TRVPFSVLYSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYF 1445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,107
Number of Sequences: 5004
Number of extensions: 40765
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)