Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0209
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994     28   5.3  
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001           27   9.2  

>12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994
          Length = 196

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = -1

Query: 437 VLNLSKIISLIRLQS*YRHCDCIYTFHIQLHYNLHSNNSLIEYIINKKQFI 285
           ++ L+ + +++ +   Y  CDC     ++LHY LH   +   +    ++F+
Sbjct: 9   IIILAMLPAILTMADPYCDCDCPQQCEVKLHYYLHQFRAGANHPNRNEEFV 59


>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
          Length = 676

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 95  FCCLAYRSGFEAIEAIDDNDGGGESAASS 9
           + C+  ++G  A+   DD+D GG  AAS+
Sbjct: 548 YICVRAKAGAAAVLLADDDDDGGAPAASA 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,145
Number of Sequences: 37544
Number of extensions: 207029
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)