Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0209
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31348| Best HMM Match : ERM (HMM E-Value=0)                         29   2.3  
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   27   9.4  

>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
          Length = 665

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 511 TGCRCRILLAQ-CGNCDM-F*YYFCNKC 588
           T C     L+Q C NC+  F +YFCNKC
Sbjct: 519 TNCHVDQELSQHCTNCEKKFAFYFCNKC 546


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 452 IESLKVLNLSKIISLIRLQS*YRHCDCIYTFHIQ 351
           +E L   N  K + L +LQS Y HC C + F+++
Sbjct: 242 LEKLAEANRHKQLILAQLQSCYSHC-CTFLFYME 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,059
Number of Sequences: 59808
Number of extensions: 267759
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)