Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0209
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 119 VKYLHFIIFCCLAYRSGFEAIEAIDDND 36
           +K++  ++FC +AY S    +E  D  D
Sbjct: 1   MKFIVLVLFCAVAYVSAQAELEPEDTMD 28


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 247 YSVLVIHI*LSKSINCFLLMIYSIRLLL 330
           YS+L+++  L + +  FL+ +Y   +LL
Sbjct: 200 YSMLLVYFHLQRHMGNFLIQVYGPCVLL 227


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  VNRFYRFKPTTIS*TTKDYEVQI 113
           +NR Y+  P  I   TKD  ++I
Sbjct: 450 LNRMYKSYPNYIDKETKDMNLEI 472


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 506 IEIEKNLN*FHYILKLKSIESLKVLNLSK 420
           +E+EK  +  HY+ + + IE    L L++
Sbjct: 21  LELEKEFHYNHYLTRRRRIEIAHALCLTE 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,034
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)