Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0209
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02920.1 68418.m00235 F-box family protein low similarity to ...    29   1.9  
At5g47310.1 68418.m05832 expressed protein                             29   3.3  
At5g62110.1 68418.m07796 hypothetical protein                          28   4.4  
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    27   7.7  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    27   7.7  

>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 467 LKLKSIESLKVLNLSKIISLIRLQS*YRHC 378
           L LK  ESLK L+LSK + L RL+   R C
Sbjct: 198 LSLKFCESLKYLDLSKSLRLTRLEIERRSC 227


>At5g47310.1 68418.m05832 expressed protein
          Length = 245

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 65  EAIEAIDDNDGGGESAASS 9
           EA+E  DDNDG  ES ASS
Sbjct: 174 EALEFSDDNDGSEESVASS 192


>At5g62110.1 68418.m07796 hypothetical protein
          Length = 691

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 131 QITSGIMFKFPNKN----DSLGKNISVETID*LHLNNIITNFN 247
           Q+ SG+ F+F N N    +++    S+E I+ L +NN+  N N
Sbjct: 503 QVLSGVNFEFANDNQFERNAILAGYSIEDINNLSINNVNDNSN 545


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 595 YCYICYKSSIKTYRN 551
           YCY+C +  +KTY N
Sbjct: 344 YCYVCKEKKMKTYNN 358


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 89  CLAYRSGFEAIEAIDDNDGG-GESAAS 12
           CLA R G + + AI + DGG GES  S
Sbjct: 638 CLAVRKGVDFLLAIQEEDGGWGESHLS 664


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,921,872
Number of Sequences: 28952
Number of extensions: 192216
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)