Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0207
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YX60 Cluster: Alpha adaptin-like protein, putative; n...    34   3.1  
UniRef50_Q8I538 Cluster: Putative uncharacterized protein; n=4; ...    33   5.3  
UniRef50_A5K210 Cluster: Alpha adaptin, putative; n=2; Plasmodiu...    33   5.3  
UniRef50_O77371 Cluster: Cleavage and polyadenylation specificit...    27   7.4  

>UniRef50_Q4YX60 Cluster: Alpha adaptin-like protein, putative; n=4;
           Plasmodium|Rep: Alpha adaptin-like protein, putative -
           Plasmodium berghei
          Length = 594

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 487 HYLCTNSI*KML-LKTVRFESKSCNIPFTGSVSSSNNYLHTLF 362
           H+  TN   K+L L  +R+ES+ C I    S+   NNYL+ +F
Sbjct: 544 HFPGTNIDNKILILVKIRYESRGCQISVISSIKPLNNYLNKIF 586


>UniRef50_Q8I538 Cluster: Putative uncharacterized protein; n=4;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1812

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 66   NYIYIHFKIYN*NILSIKPVINKKVATTVPVVKFEVDCLNTNHFS*HIIKKVLKFA*N 239
            N  Y HFKI    +  I+ + N  V T +P +   + C+N N+   H  K + K+  N
Sbjct: 1540 NSFYKHFKINEMYLYHIQSLYNDSVPT-IPCLNMFISCMNYNYGKIHKKKSLFKYELN 1596


>UniRef50_A5K210 Cluster: Alpha adaptin, putative; n=2;
            Plasmodium|Rep: Alpha adaptin, putative - Plasmodium
            vivax
          Length = 1281

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 487  HYLCTNSI*KML-LKTVRFESKSCNIPFTGSVSSSNNYLHTLF 362
            H+  T S  K+L L  +R E K C I    S+   NNYL+ +F
Sbjct: 1231 HFPATESENKILILVKIRHEMKGCQISVVSSIKHLNNYLNKIF 1273


>UniRef50_O77371 Cluster: Cleavage and polyadenylation specificity
           factor protein, putative; n=7; Plasmodium|Rep: Cleavage
           and polyadenylation specificity factor protein, putative
           - Plasmodium falciparum (isolate 3D7)
          Length = 1017

 Score = 27.1 bits (57), Expect(2) = 7.4
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 60  NSNYIYIHFKIYN*NILSIKPVI--NKKVATT 149
           N NYIYIH  I+  +IL +K  I  NK + TT
Sbjct: 587 NINYIYIHKNIHK-HILQLKKKITKNKHINTT 617



 Score = 24.2 bits (50), Expect(2) = 7.4
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 129 NKKVATTVPVVKFEVDC-LNTNHFS*HIIKKVLKFA*NLKNKIIYLIFNL*IPILISHIN 305
           NKK+      V  ++    N   F   +  K   F  + KN + YL     IPI+I H  
Sbjct: 634 NKKIKKECTYVNKKIKVPFNAYMFYIPLTHKPYIFLFSKKNLLQYLKTKH-IPIIIEHKE 692

Query: 306 RKMVTDELAMF 338
           +K+ +D+L ++
Sbjct: 693 QKINSDQLFLY 703


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,811,733
Number of Sequences: 1657284
Number of extensions: 8490361
Number of successful extensions: 16389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16384
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)