Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0207
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   6.5  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    25   8.6  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 9   DDSVHIVLAFQ*IKCVANSNYIYIHFKIYN*NILSIKPVINKKVATTVPVVKFEVDCL 182
           D S H+   FQ I   +N++   IHF+  N  ++     I K V    PV++FE  CL
Sbjct: 76  DKSHHV--QFQDIVYRSNTSASEIHFQAENAPLVQWYSDIFK-VLVKAPVIQFEDQCL 130


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 415 IPFTGSVSSSNNYLHTL 365
           +PF  S SSS+NY H L
Sbjct: 111 LPFRSSSSSSSNYRHNL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,950
Number of Sequences: 5004
Number of extensions: 39918
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)