Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0207
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   28   5.2  
SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 519  KRFVPPTRSCHITYAQTAFEKCYL 448
            K F PP+ +CH  Y+   F+ C L
Sbjct: 934  KAFTPPSLTCHYLYSYRTFQCCDL 957


>SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -1

Query: 457 MLLKTVRFESKSCNIPFTGSVSSSNNYL-HTLF*RFKCLITNIASSSVTILRLI*LIKMG 281
           ++ +T  +E     I +  ++ +    + H  F  FKC I ++ + S   +  +   K  
Sbjct: 11  VVCRTCVYEKLESKIEYLNALQTKPTLVSHMDFLCFKCTIIHLNALSFLRIERLNTKKTW 70

Query: 280 IQRLNIRYIILFFKF*AN 227
           I+RLN + + LF  F  N
Sbjct: 71  IERLNPKSLALFLGFLTN 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,072
Number of Sequences: 59808
Number of extensions: 272120
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)