Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0207
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    28   6.0  
Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst compone...    27   8.0  

>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 454 LLKTVRFESKSCNIPFTGSVSSSNNYLHTLF*RFKCLITNIASSSVTILRLI*LIKMGIQ 275
           LL+++ +  + C I F         Y   +F R   + TN A   +TI RLI L  +GI+
Sbjct: 86  LLRSLVYWDQPCKIMFN-EYECYPFYTANIFIRLLMICTNCA---ITIDRLITLSNVGIK 141

Query: 274 RLNIRYIILF 245
               R I+LF
Sbjct: 142 STAQRGIVLF 151


>Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical
           protein F56G4.6 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 32  SISINKVCS*FQLHIHTLQNLQLEHF 109
           S+ + KVCS ++++   L+N  LEHF
Sbjct: 195 SLDVLKVCSKYKIYPEPLENWILEHF 220


>U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst component
           protein 7 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 579 QLSV*LTIHIKQIL-NVNPSLKRFVPPTRSCHITYAQT 469
           QL V  + ++ +++ N+N    +FVPP  + H T A T
Sbjct: 378 QLQVKCSSYVNEVIENLNEDTTKFVPPDGNVHPTTAST 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,483
Number of Sequences: 27780
Number of extensions: 223984
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)