Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0205
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   3.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.6  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 22  PPNFSRSFGTPFNKTYRQ--GPQPFVQQKAYPQT 117
           PP+ S S+G P N   R    P P  Q  A  Q+
Sbjct: 74  PPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQQS 107


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 22  PPNFSRSFGTPFNKTYRQ--GPQPFVQQKAYPQT 117
           PP+ S S+G P N   R    P P  Q  A  Q+
Sbjct: 230 PPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQQS 263


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 82  QPFVQQKAYPQTAFARGASPQRSQSPKPTDEHF 180
           QP+V+    P    AR +  ++   P P  +++
Sbjct: 328 QPYVRNTTVPTQGVARMSRGRQYNYPNPQQQYY 360


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 82  QPFVQQKAYPQTAFARGASPQRSQSPKPTDEHF 180
           QP+V+    P    AR +  ++   P P  +++
Sbjct: 276 QPYVRNTTVPTQGVARMSRGRQYNYPNPQQQYY 308


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 178 FVKVPVHHETP 210
           FVKVP H++ P
Sbjct: 141 FVKVPRHYDDP 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,562
Number of Sequences: 336
Number of extensions: 2306
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)